Analysis of interatomic Contacts of Structural Units in PDB entry:
8TK9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TK9 entry

There are 2 chains in PDB entry 8TK9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 43HIS 250
B
 VAL 59HIS 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8TK9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 100Right-handed alpha
Helix 2
AA2
A
121 125Right-handed 310
Helix 3
AA3
A
220 224Right-handed 310
Helix 4
AA4
B
61 81Right-handed alpha
Helix 5
AA5
B
82 84Right-handed 310
Helix 6
AA6
B
85 99Right-handed alpha
Helix 7
AA7
B
102 109Right-handed alpha
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There are 3 sheets in PDB entry 8TK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
63 72anti-parallel
Strand 3
A
108 117anti-parallel
Strand 4
A
164 174anti-parallel
Strand 5
A
236 247parallel
Strand 6
A
225 233anti-parallel
Strand 7
A
190 195anti-parallel
Strand 8
A
198 199anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
63 72anti-parallel
Strand 3
A
108 117anti-parallel
Strand 4
A
164 174anti-parallel
Strand 5
A
179 185anti-parallel
Strand 6
A
213 216anti-parallel
Strand 7
A
206 208anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
138 148parallel
Strand 3
A
126 133anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
84 87anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il