Analysis of interatomic Contacts of Structural Units in PDB entry:
8TKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TKA entry

There are 2 chains in PDB entry 8TKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1VAL 366
B
 MSE 1VAL 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8TKA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 12Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
58 64Right-handed alpha
Helix 4
AA4
A
71 80Right-handed alpha
Helix 5
AA5
A
84 91Right-handed alpha
Helix 6
AA6
A
104 117Right-handed alpha
Helix 7
AA7
A
119 127Right-handed alpha
Helix 8
AA8
A
134 147Right-handed alpha
Helix 9
AA9
A
163 170Right-handed alpha
Helix 10
AB1
A
196 208Right-handed 310
Helix 11
AB2
A
237 240Right-handed 310
Helix 12
AB3
A
244 272Right-handed alpha
Helix 13
AB4
A
272 277Right-handed alpha
Helix 14
AB5
A
282 297Right-handed alpha
Helix 15
AB6
A
300 313Right-handed alpha
Helix 16
AB7
A
318 330Right-handed alpha
Helix 17
AB8
A
331 335Right-handed 310
Helix 18
AB9
B
3 12Right-handed alpha
Helix 19
AC1
B
47 55Right-handed alpha
Helix 20
AC2
B
58 64Right-handed alpha
Helix 21
AC3
B
65 69Right-handed 310
Helix 22
AC4
B
71 80Right-handed alpha
Helix 23
AC5
B
84 91Right-handed alpha
Helix 24
AC6
B
104 117Right-handed alpha
Helix 25
AC7
B
119 127Right-handed alpha
Helix 26
AC8
B
134 147Right-handed alpha
Helix 27
AC9
B
163 170Right-handed alpha
Helix 28
AD1
B
195 205Right-handed alpha
Helix 29
AD2
B
206 208Right-handed 310
Helix 30
AD3
B
244 272Right-handed alpha
Helix 31
AD4
B
272 279Right-handed alpha
Helix 32
AD5
B
282 297Right-handed alpha
Helix 33
AD6
B
300 313Right-handed alpha
Helix 34
AD7
B
318 330Right-handed alpha
Helix 35
AD8
B
331 335Right-handed 310
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There are 10 sheets in PDB entry 8TKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
40 46anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
157 159anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
210 215anti-parallel
Strand 4
A
234 235anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
364 365anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
349 353anti-parallel
Strand 3
A
356 361anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
30 37anti-parallel
Strand 3
B
40 46anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
157 159anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
174 182anti-parallel
Strand 3
B
210 215anti-parallel
Strand 4
B
234 235anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
174 182anti-parallel
Strand 3
B
364 365anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 345first strand
Strand 2
B
348 353anti-parallel
Strand 3
B
356 361anti-parallel
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