Analysis of interatomic Contacts of Structural Units in PDB entry:
8TL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TL1 entry

There is 1 chain in PDB entry 8TL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 19VAL 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 8TL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 55Right-handed alpha
Helix 2
AA2
A
58 67Right-handed alpha
Helix 3
AA3
A
68 70Right-handed 310
Helix 4
AA4
A
71 79Right-handed alpha
Helix 5
AA5
A
83 91Right-handed alpha
Helix 6
AA6
A
104 116Right-handed alpha
Helix 7
AA7
A
119 127Right-handed alpha
Helix 8
AA8
A
134 147Right-handed alpha
Helix 9
AA9
A
163 169Right-handed alpha
Helix 10
AB1
A
195 199Right-handed 310
Helix 11
AB2
A
204 208Right-handed 310
Helix 12
AB3
A
237 240Right-handed 310
Helix 13
AB4
A
244 272Right-handed alpha
Helix 14
AB5
A
272 277Right-handed alpha
Helix 15
AB6
A
282 295Right-handed alpha
Helix 16
AB7
A
300 313Right-handed alpha
Helix 17
AB8
A
318 330Right-handed alpha
Helix 18
AB9
A
331 335Right-handed 310
Helix 19
AC1
A
336 340Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 8TL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
41 47anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
157 159anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
174 182anti-parallel
Strand 3
A
210 215anti-parallel
Strand 4
A
234 235anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
174 182anti-parallel
Strand 3
A
364 365anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 345first strand
Strand 2
A
348 352anti-parallel
Strand 3
A
357 361anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il