Analysis of interatomic Contacts of Structural Units in PDB entry:
8TL8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TL8 entry

There are 2 chains in PDB entry 8TL8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	VAL 366
B	GLY 18	VAL 366

There are 35 helices in PDB entry 8TL8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	55	Right-handed alpha
Helix 2	AA2	A	58	63	Right-handed alpha
Helix 3	AA3	A	65	70	Right-handed 310
Helix 4	AA4	A	71	80	Right-handed alpha
Helix 5	AA5	A	84	91	Right-handed alpha
Helix 6	AA6	A	104	116	Right-handed alpha
Helix 7	AA7	A	122	126	Right-handed 310
Helix 8	AA8	A	134	147	Right-handed alpha
Helix 9	AA9	A	163	169	Right-handed alpha
Helix 10	AB1	A	170	172	Right-handed 310
Helix 11	AB2	A	196	200	Right-handed 310
Helix 12	AB3	A	201	208	Right-handed 310
Helix 13	AB4	A	244	271	Right-handed alpha
Helix 14	AB5	A	272	277	Right-handed alpha
Helix 15	AB6	A	278	280	Right-handed 310
Helix 16	AB7	A	283	297	Right-handed alpha
Helix 17	AB8	A	300	313	Right-handed alpha
Helix 18	AB9	A	318	329	Right-handed alpha
Helix 19	AC1	B	47	55	Right-handed alpha
Helix 20	AC2	B	58	63	Right-handed alpha
Helix 21	AC3	B	65	70	Right-handed 310
Helix 22	AC4	B	71	79	Right-handed alpha
Helix 23	AC5	B	84	91	Right-handed alpha
Helix 24	AC6	B	104	116	Right-handed alpha
Helix 25	AC7	B	122	126	Right-handed 310
Helix 26	AC8	B	134	147	Right-handed alpha
Helix 27	AC9	B	163	169	Right-handed alpha
Helix 28	AD1	B	170	172	Right-handed 310
Helix 29	AD2	B	196	200	Right-handed 310
Helix 30	AD3	B	204	208	Right-handed 310
Helix 31	AD4	B	244	271	Right-handed alpha
Helix 32	AD5	B	272	277	Right-handed alpha
Helix 33	AD6	B	283	297	Right-handed alpha
Helix 34	AD7	B	300	313	Right-handed alpha
Helix 35	AD8	B	318	329	Right-handed alpha

There are 10 sheets in PDB entry 8TL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	30	37	anti-parallel
Strand 3	A	40	46	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	157	159	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	190	first strand
Strand 2	A	174	182	anti-parallel
Strand 3	A	210	215	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	190	first strand
Strand 2	A	174	182	anti-parallel
Strand 3	A	364	365	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	345	first strand
Strand 2	A	348	352	anti-parallel
Strand 3	A	357	361	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	30	37	anti-parallel
Strand 3	B	40	46	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	157	159	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	174	182	anti-parallel
Strand 3	B	210	215	anti-parallel
Strand 4	B	234	235	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	174	182	anti-parallel
Strand 3	B	364	365	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	345	first strand
Strand 2	B	348	353	anti-parallel
Strand 3	B	356	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TL8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TL8