Analysis of interatomic Contacts of Structural Units in PDB entry:
8TLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TLC entry

There are 4 chains in PDB entry 8TLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 43HIS 279
A
 THR 281HIS 504
B
 TRP 43HIS 279
B
 THR 281HIS 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8TLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 53Right-handed alpha
Helix 2
AA2
A
53 70Right-handed alpha
Helix 3
AA3
A
81 89Right-handed alpha
Helix 4
AA4
A
90 95Right-handed 310
Helix 5
AA5
A
109 127Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
166 169Right-handed 310
Helix 8
AA8
A
184 189Right-handed alpha
Helix 9
AA9
A
206 215Right-handed alpha
Helix 10
AB1
A
233 244Right-handed alpha
Helix 11
AB2
A
255 261Right-handed alpha
Helix 12
AB3
A
279 283Right-handed 310
Helix 13
AB4
A
310 320Right-handed alpha
Helix 14
AB5
A
328 342Right-handed alpha
Helix 15
AB6
A
344 368Right-handed alpha
Helix 16
AB7
A
386 390Right-handed 310
Helix 17
AB8
A
392 404Right-handed alpha
Helix 18
AB9
A
428 433Right-handed alpha
Helix 19
AC1
A
437 462Right-handed alpha
Helix 20
AC2
A
467 475Right-handed alpha
Helix 21
AC3
A
477 494Right-handed alpha
Helix 22
AC4
B
48 53Right-handed alpha
Helix 23
AC5
B
53 70Right-handed alpha
Helix 24
AC6
B
81 89Right-handed alpha
Helix 25
AC7
B
90 95Right-handed 310
Helix 26
AC8
B
109 127Right-handed alpha
Helix 27
AC9
B
142 155Right-handed alpha
Helix 28
AD1
B
166 169Right-handed 310
Helix 29
AD2
B
171 175Right-handed 310
Helix 30
AD3
B
184 189Right-handed alpha
Helix 31
AD4
B
206 215Right-handed alpha
Helix 32
AD5
B
233 244Right-handed alpha
Helix 33
AD6
B
252 254Right-handed 310
Helix 34
AD7
B
255 261Right-handed alpha
Helix 35
AD8
B
312 320Right-handed alpha
Helix 36
AD9
B
328 342Right-handed alpha
Helix 37
AE1
B
344 368Right-handed alpha
Helix 38
AE2
B
387 390Right-handed 310
Helix 39
AE3
B
394 395Right-handed 310
Helix 40
AE4
B
397 397Right-handed 310
Helix 41
AE5
B
398 402Right-handed alpha
Helix 42
AE6
B
428 433Right-handed alpha
Helix 43
AE7
B
442 462Right-handed alpha
Helix 44
AE8
B
467 475Right-handed alpha
Helix 45
AE9
B
477 494Right-handed alpha
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There are 8 sheets in PDB entry 8TLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
405 406parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
273 277anti-parallel
Strand 4
A
247 251parallel
Strand 5
A
220 224parallel
Strand 6
A
160 164parallel
Strand 7
A
191 195parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
384 385anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
426 427anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
423 424anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
288 293anti-parallel
Strand 3
B
274 277anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 195first strand
Strand 2
B
161 164parallel
Strand 3
B
220 224parallel
Strand 4
B
247 251parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 372first strand
Strand 2
B
381 385anti-parallel
Strand 3
B
423 427anti-parallel
Strand 4
B
409 410anti-parallel
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