Analysis of interatomic Contacts of Structural Units in PDB entry:
8TLD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TLD entry

There are 5 chains in PDB entry 8TLD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 23	LEU 116
C	ILE 25	TRP 131
D	GLU 24	ILE 132
E	ARG 326	SER 438
F	LYS 27	ASP 334

There are 15 helices in PDB entry 8TLD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	27	33	Right-handed alpha
Helix 2	AA2	B	51	55	Right-handed alpha
Helix 3	AA3	C	26	41	Right-handed alpha
Helix 4	AA4	C	41	46	Right-handed alpha
Helix 5	AA5	C	64	78	Right-handed alpha
Helix 6	AA6	C	84	105	Right-handed alpha
Helix 7	AA7	C	113	130	Right-handed alpha
Helix 8	AA8	D	29	41	Right-handed alpha
Helix 9	AA9	D	41	46	Right-handed alpha
Helix 10	AB1	D	60	63	Right-handed 310
Helix 11	AB2	D	64	79	Right-handed alpha
Helix 12	AB3	D	83	106	Right-handed alpha
Helix 13	AB4	D	112	130	Right-handed alpha
Helix 14	AB5	E	382	386	Right-handed 310
Helix 15	AB6	F	232	237	Right-handed alpha

There are 11 sheets in PDB entry 8TLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	42	50	anti-parallel
Strand 3	B	88	96	anti-parallel
Strand 4	B	72	74	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	105	112	anti-parallel
Strand 3	E	330	333	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	D	109	111	anti-parallel
Strand 3	F	75	79	anti-parallel
Strand 4	F	64	71	anti-parallel
Strand 5	F	94	103	anti-parallel
Strand 6	F	108	110	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	D	109	111	anti-parallel
Strand 3	F	75	79	anti-parallel
Strand 4	F	64	71	anti-parallel
Strand 5	F	94	103	anti-parallel
Strand 6	F	114	118	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	350	first strand
Strand 2	E	353	359	anti-parallel
Strand 3	E	396	398	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	392	first strand
Strand 2	E	370	378	anti-parallel
Strand 3	E	407	416	anti-parallel
Strand 4	E	432	435	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	42	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	83	87	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	140	first strand
Strand 2	F	149	158	anti-parallel
Strand 3	F	193	201	anti-parallel
Strand 4	F	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	168	175	anti-parallel
Strand 3	F	211	218	anti-parallel
Strand 4	F	227	231	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	250	first strand
Strand 2	F	253	257	anti-parallel
Strand 3	F	293	297	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	289	first strand
Strand 2	F	270	278	anti-parallel
Strand 3	F	304	312	anti-parallel
Strand 4	F	329	331	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TLD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TLD