Analysis of interatomic Contacts of Structural Units in PDB entry:
8TLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TLM entry

There are 3 chains in PDB entry 8TLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2PRO 222
B
 ALA 1GLY 215
C
 ASN 33ILE 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8TLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 88Right-handed 310
Helix 2
AA2
A
165 167Right-handed 310
Helix 3
AA3
A
196 200Right-handed 310
Helix 4
AA4
B
79 83Right-handed 310
Helix 5
AA5
B
124 131Right-handed alpha
Helix 6
AA6
B
186 191Right-handed alpha
Helix 7
AA7
C
34 63Right-handed alpha
Helix 8
AA8
C
68 96Right-handed alpha
Helix 9
AA9
C
101 137Right-handed alpha
Helix 10
AB1
C
137 145Right-handed alpha
Helix 11
AB2
C
146 170Right-handed alpha
Helix 12
AB3
C
191 207Right-handed alpha
Helix 13
AB4
C
207 226Right-handed alpha
Helix 14
AB5
C
238 265Right-handed alpha
Helix 15
AB6
C
274 304Right-handed alpha
Helix 16
AB7
C
304 312Right-handed alpha
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There are 10 sheets in PDB entry 8TLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
67 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
116 120parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
57 59anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
C
172 177anti-parallel
Strand 3
C
181 185anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
144 154anti-parallel
Strand 3
A
185 194anti-parallel
Strand 4
A
172 174anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
144 154anti-parallel
Strand 3
A
185 194anti-parallel
Strand 4
A
178 179anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
203 209anti-parallel
Strand 3
A
214 220anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
19 29anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
62 65anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
105 109parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
132 142anti-parallel
Strand 3
B
176 185anti-parallel
Strand 4
B
162 166anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
148 153anti-parallel
Strand 3
B
194 200anti-parallel
Strand 4
B
208 213anti-parallel
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