Analysis of interatomic Contacts of Structural Units in PDB entry:
8TLQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TLQ entry

There are 8 chains in PDB entry 8TLQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 20	TRP 1504
D	MET 1	SER 243
E	ASN 2	GLU 235
F	LEU -1	ILE 487
G	MET 1	SER 118
B	THR 128	VAL 985
P	C 105	C 115
T	A 1	G 15

There are 77 helices in PDB entry 8TLQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	117	Right-handed alpha
Helix 2	AA2	A	165	167	Right-handed 310
Helix 3	AA3	A	168	178	Right-handed alpha
Helix 4	AA4	A	194	203	Right-handed alpha
Helix 5	AA5	A	228	233	Right-handed alpha
Helix 6	AA6	A	235	246	Right-handed alpha
Helix 7	AA7	A	290	295	Right-handed alpha
Helix 8	AA8	A	306	322	Right-handed alpha
Helix 9	AA9	A	345	360	Right-handed alpha
Helix 10	AB1	A	531	541	Right-handed alpha
Helix 11	AB2	A	554	558	Right-handed 310
Helix 12	AB3	A	612	623	Right-handed alpha
Helix 13	AB4	A	725	735	Right-handed alpha
Helix 14	AB5	A	744	760	Right-handed alpha
Helix 15	AB6	A	773	784	Right-handed alpha
Helix 16	AB7	A	788	794	Right-handed alpha
Helix 17	AB8	A	806	813	Right-handed alpha
Helix 18	AB9	A	825	834	Right-handed alpha
Helix 19	AC1	A	840	848	Right-handed alpha
Helix 20	AC2	A	857	865	Right-handed alpha
Helix 21	AC3	A	870	896	Right-handed alpha
Helix 22	AC4	A	896	909	Right-handed alpha
Helix 23	AC5	A	911	917	Right-handed alpha
Helix 24	AC6	A	919	933	Right-handed alpha
Helix 25	AC7	A	943	949	Right-handed alpha
Helix 26	AC8	A	978	988	Right-handed alpha
Helix 27	AC9	A	990	992	Right-handed 310
Helix 28	AD1	A	1018	1023	Right-handed alpha
Helix 29	AD2	A	1044	1067	Right-handed alpha
Helix 30	AD3	A	1071	1095	Right-handed alpha
Helix 31	AD4	A	1106	1131	Right-handed alpha
Helix 32	AD5	A	1156	1173	Right-handed alpha
Helix 33	AD6	A	1224	1241	Right-handed alpha
Helix 34	AD7	A	1243	1261	Right-handed alpha
Helix 35	AD8	A	1286	1299	Right-handed alpha
Helix 36	AD9	A	1322	1327	Right-handed alpha
Helix 37	AE1	A	1329	1336	Right-handed alpha
Helix 38	AE2	A	1342	1360	Right-handed alpha
Helix 39	AE3	A	1365	1373	Right-handed alpha
Helix 40	AE4	A	1420	1455	Right-handed alpha
Helix 41	AE5	A	1461	1468	Right-handed alpha
Helix 42	AE6	A	1473	1488	Right-handed alpha
Helix 43	AE7	A	1488	1502	Right-handed alpha
Helix 44	AE8	D	2	24	Right-handed alpha
Helix 45	AE9	D	51	68	Right-handed alpha
Helix 46	AF1	D	109	130	Right-handed alpha
Helix 47	AF2	D	239	243	Right-handed 310
Helix 48	AF3	E	3	24	Right-handed alpha
Helix 49	AF4	E	51	68	Right-handed alpha
Helix 50	AF5	E	110	130	Right-handed alpha
Helix 51	AF6	E	154	159	Right-handed 310
Helix 52	AF7	E	164	175	Right-handed alpha
Helix 53	AF8	F	0	9	Right-handed alpha
Helix 54	AF9	F	53	76	Right-handed alpha
Helix 55	AG1	F	92	96	Right-handed 310
Helix 56	AG2	F	115	125	Right-handed alpha
Helix 57	AG3	F	131	137	Right-handed alpha
Helix 58	AG4	F	159	164	Right-handed alpha
Helix 59	AG5	F	227	241	Right-handed alpha
Helix 60	AG6	F	247	253	Right-handed alpha
Helix 61	AG7	F	272	291	Right-handed alpha
Helix 62	AG8	F	321	325	Right-handed 310
Helix 63	AG9	F	357	365	Right-handed alpha
Helix 64	AH1	F	391	405	Right-handed alpha
Helix 65	AH2	F	411	416	Right-handed alpha
Helix 66	AH3	G	4	15	Right-handed alpha
Helix 67	AH4	G	22	30	Right-handed alpha
Helix 68	AH5	G	32	45	Right-handed alpha
Helix 69	AH6	B	132	154	Right-handed alpha
Helix 70	AH7	B	183	191	Right-handed alpha
Helix 71	AH8	B	214	221	Right-handed alpha
Helix 72	AH9	B	229	239	Right-handed alpha
Helix 73	AI1	B	882	899	Right-handed alpha
Helix 74	AI2	B	904	921	Right-handed alpha
Helix 75	AI3	B	923	941	Right-handed alpha
Helix 76	AI4	B	950	961	Right-handed alpha
Helix 77	AI5	B	962	967	Right-handed alpha

There are 21 sheets in PDB entry 8TLQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	213	first strand
Strand 2	A	23	35	anti-parallel
Strand 3	A	56	64	anti-parallel
Strand 4	A	70	75	anti-parallel
Strand 5	A	266	270	parallel
Strand 6	A	217	218	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	81	85	anti-parallel
Strand 3	A	156	163	anti-parallel
Strand 4	A	137	147	anti-parallel
Strand 5	A	937	938	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	A	520	523	anti-parallel
Strand 3	D	139	147	anti-parallel
Strand 4	D	72	81	anti-parallel
Strand 5	D	87	94	anti-parallel
Strand 6	D	213	218	anti-parallel
Strand 7	D	200	202	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	565	first strand
Strand 2	A	568	570	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	585	first strand
Strand 2	A	588	589	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	179	first strand
Strand 2	A	602	606	anti-parallel
Strand 3	E	140	147	anti-parallel
Strand 4	E	72	80	anti-parallel
Strand 5	E	87	94	anti-parallel
Strand 6	E	213	218	anti-parallel
Strand 7	E	196	202	anti-parallel
Strand 8	B	980	981	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	742	first strand
Strand 2	A	712	717	parallel
Strand 3	A	691	697	anti-parallel
Strand 4	A	669	676	anti-parallel
Strand 5	A	763	765	parallel
Strand 6	A	822	823	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	965	967	first strand
Strand 2	A	1184	1192	anti-parallel
Strand 3	A	971	976	anti-parallel
Strand 4	A	1179	1180	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1138	1141	first strand
Strand 2	A	1146	1149	anti-parallel
Strand 3	A	971	976	anti-parallel
Strand 4	A	1184	1192	anti-parallel
Strand 5	A	1195	1201	anti-parallel
Strand 6	A	1210	1214	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	994	997	first strand
Strand 2	A	1034	1037	anti-parallel
Strand 3	A	1027	1029	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1008	first strand
Strand 2	A	1011	1013	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1270	1274	first strand
Strand 2	A	1308	1312	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	48	49	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	47	49	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	G	109	110	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	102	109	parallel
Strand 3	F	147	149	anti-parallel
Strand 4	F	154	158	anti-parallel
Strand 5	F	184	186	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	89	first strand
Strand 2	F	102	109	parallel
Strand 3	F	172	177	anti-parallel
Strand 4	F	189	191	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	114	first strand
Strand 2	F	366	367	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	338	first strand
Strand 2	F	295	298	parallel
Strand 3	F	254	259	parallel
Strand 4	F	213	217	parallel
Strand 5	F	469	474	anti-parallel
Strand 6	F	479	486	anti-parallel
Strand 7	G	65	67	parallel
Strand 8	G	53	60	anti-parallel
Strand 9	G	80	89	anti-parallel
Strand 10	G	20	21	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	343	347	first strand
Strand 2	F	350	355	anti-parallel
Strand 3	F	435	441	parallel
Strand 4	F	454	462	parallel
Strand 5	F	445	451	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	170	174	parallel
Strand 3	B	207	210	parallel
Strand 4	B	225	227	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TLQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TLQ