Analysis of interatomic Contacts of Structural Units in PDB entry:
8TLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TLY entry

There are 2 chains in PDB entry 8TLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 130SER 357
B
 HIS 132SER 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8TLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 161Right-handed alpha
Helix 2
AA2
A
168 172Right-handed 310
Helix 3
AA3
A
174 177Right-handed 310
Helix 4
AA4
A
189 207Right-handed alpha
Helix 5
AA5
A
207 213Right-handed alpha
Helix 6
AA6
A
248 263Right-handed alpha
Helix 7
AA7
A
283 288Right-handed alpha
Helix 8
AA8
A
314 322Right-handed alpha
Helix 9
AA9
B
143 161Right-handed alpha
Helix 10
AB1
B
168 172Right-handed 310
Helix 11
AB2
B
174 177Right-handed 310
Helix 12
AB3
B
189 207Right-handed alpha
Helix 13
AB4
B
207 213Right-handed alpha
Helix 14
AB5
B
248 264Right-handed alpha
Helix 15
AB6
B
284 287Right-handed 310
Helix 16
AB7
B
314 322Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8TLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 185first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
333 337anti-parallel
Strand 4
A
353 355anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 282first strand
Strand 2
A
236 243anti-parallel
Strand 3
A
217 225anti-parallel
Strand 4
A
325 331anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 185first strand
Strand 2
B
135 140anti-parallel
Strand 3
B
333 337anti-parallel
Strand 4
B
353 355anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 282first strand
Strand 2
B
236 243anti-parallel
Strand 3
B
217 225anti-parallel
Strand 4
B
325 331anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il