Analysis of interatomic Contacts of Structural Units in PDB entry:
8TM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TM0 entry

There are 2 chains in PDB entry 8TM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11THR 263
C
 GLU 1GLY 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8TM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 49Right-handed alpha
Helix 2
AA2
A
62 68Right-handed 310
Helix 3
AA3
A
167 178Right-handed alpha
Helix 4
AA4
A
191 197Right-handed 310
Helix 5
AA5
C
59 79Right-handed alpha
Helix 6
AA6
C
132 149Right-handed alpha
Helix 7
AA7
C
153 175Right-handed alpha
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There are 6 sheets in PDB entry 8TM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
142 147anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
126 133anti-parallel
Strand 3
A
72 78parallel
Strand 4
A
108 112anti-parallel
Strand 5
A
116 120anti-parallel
Strand 6
A
99 101parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
126 133parallel
Strand 4
A
28 37anti-parallel
Strand 5
A
23 24anti-parallel
Strand 6
A
152 154anti-parallel
Strand 7
A
157 166anti-parallel
Strand 8
A
255 260anti-parallel
Strand 9
A
181 182anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
200 208anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
245 249anti-parallel
Strand 5
A
228 231parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
3 14anti-parallel
Strand 3
C
23 28anti-parallel
Strand 4
C
31 37anti-parallel
Strand 5
C
41 42anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
3 14anti-parallel
Strand 3
C
87 98anti-parallel
Strand 4
C
104 112anti-parallel
Strand 5
C
115 121anti-parallel
Strand 6
C
126 128anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il