Analysis of interatomic Contacts of Structural Units in PDB entry:
8TM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TM3 entry

There are 11 chains in PDB entry 8TM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 5	ALA 232
B	SER 7	ALA 245
C	ILE 7	GLU 237
D	MET 1	ILE 241
E	MET 1	ARG 239
F	GLY 5	GLU 246
G	GLY 4	GLU 244
c	ASP 34	THR 288
d	MET 1	PHE 264
i	LEU 6	TRP 122
j	ASP 11	PHE 123

There are 74 helices in PDB entry 8TM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	80	102	Right-handed alpha
Helix 3	AA3	A	106	124	Right-handed alpha
Helix 4	AA4	A	139	143	Right-handed 310
Helix 5	AA5	A	166	178	Right-handed alpha
Helix 6	AA6	A	186	198	Right-handed alpha
Helix 7	AA7	A	222	232	Right-handed alpha
Helix 8	AA8	B	20	30	Right-handed alpha
Helix 9	AA9	B	79	101	Right-handed alpha
Helix 10	AB1	B	106	124	Right-handed alpha
Helix 11	AB2	B	168	177	Right-handed alpha
Helix 12	AB3	B	178	180	Right-handed 310
Helix 13	AB4	B	185	201	Right-handed alpha
Helix 14	AB5	B	207	211	Right-handed 310
Helix 15	AB6	B	230	245	Right-handed alpha
Helix 16	AB7	C	16	28	Right-handed alpha
Helix 17	AB8	C	76	98	Right-handed alpha
Helix 18	AB9	C	103	121	Right-handed alpha
Helix 19	AC1	C	164	176	Right-handed alpha
Helix 20	AC2	C	177	182	Right-handed alpha
Helix 21	AC3	C	184	199	Right-handed alpha
Helix 22	AC4	C	202	204	Right-handed 310
Helix 23	AC5	C	221	237	Right-handed alpha
Helix 24	AC6	D	21	34	Right-handed alpha
Helix 25	AC7	D	81	104	Right-handed alpha
Helix 26	AC8	D	108	122	Right-handed alpha
Helix 27	AC9	D	176	184	Right-handed alpha
Helix 28	AD1	D	190	205	Right-handed alpha
Helix 29	AD2	D	230	241	Right-handed alpha
Helix 30	AD3	E	1	7	Right-handed 310
Helix 31	AD4	E	19	32	Right-handed alpha
Helix 32	AD5	E	78	99	Right-handed alpha
Helix 33	AD6	E	104	122	Right-handed alpha
Helix 34	AD7	E	165	175	Right-handed alpha
Helix 35	AD8	E	175	181	Right-handed alpha
Helix 36	AD9	E	183	199	Right-handed alpha
Helix 37	AE1	E	225	234	Right-handed alpha
Helix 38	AE2	F	21	34	Right-handed alpha
Helix 39	AE3	F	81	104	Right-handed alpha
Helix 40	AE4	F	108	126	Right-handed alpha
Helix 41	AE5	F	169	180	Right-handed alpha
Helix 42	AE6	F	186	202	Right-handed alpha
Helix 43	AE7	F	220	222	Right-handed 310
Helix 44	AE8	F	229	245	Right-handed alpha
Helix 45	AE9	G	22	35	Right-handed alpha
Helix 46	AF1	G	83	106	Right-handed alpha
Helix 47	AF2	G	110	128	Right-handed alpha
Helix 48	AF3	G	171	186	Right-handed alpha
Helix 49	AF4	G	190	207	Right-handed alpha
Helix 50	AF5	G	231	244	Right-handed alpha
Helix 51	AF6	c	35	46	Right-handed alpha
Helix 52	AF7	c	61	66	Right-handed alpha
Helix 53	AF8	c	76	87	Right-handed alpha
Helix 54	AF9	c	88	90	Right-handed 310
Helix 55	AG1	c	142	154	Right-handed alpha
Helix 56	AG2	c	171	175	Right-handed 310
Helix 57	AG3	c	180	184	Right-handed 310
Helix 58	AG4	c	214	226	Right-handed alpha
Helix 59	AG5	c	243	251	Right-handed alpha
Helix 60	AG6	c	251	256	Right-handed alpha
Helix 61	AG7	c	266	278	Right-handed alpha
Helix 62	AG8	d	26	40	Right-handed alpha
Helix 63	AG9	d	64	69	Right-handed alpha
Helix 64	AH1	d	81	84	Right-handed 310
Helix 65	AH2	d	98	114	Right-handed alpha
Helix 66	AH3	d	131	136	Right-handed alpha
Helix 67	AH4	d	148	159	Right-handed alpha
Helix 68	AH5	d	185	198	Right-handed alpha
Helix 69	AH6	d	213	229	Right-handed alpha
Helix 70	AH7	i	53	58	Right-handed alpha
Helix 71	AH8	i	72	90	Right-handed alpha
Helix 72	AH9	i	105	119	Right-handed alpha
Helix 73	AI1	j	75	87	Right-handed alpha
Helix 74	AI2	j	102	119	Right-handed alpha

There are 23 sheets in PDB entry 8TM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	A	160	162	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	208	209	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	72	74	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	148	149	anti-parallel
Strand 3	A	155	156	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	37	anti-parallel
Strand 3	B	44	46	anti-parallel
Strand 4	B	213	218	anti-parallel
Strand 5	B	223	228	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	72	76	anti-parallel
Strand 3	B	134	139	anti-parallel
Strand 4	B	145	151	anti-parallel
Strand 5	B	154	157	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	32	37	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	206	212	anti-parallel
Strand 5	C	217	219	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	65	first strand
Strand 2	C	69	72	anti-parallel
Strand 3	C	132	136	anti-parallel
Strand 4	C	142	146	anti-parallel
Strand 5	C	154	155	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	37	42	anti-parallel
Strand 3	D	45	51	anti-parallel
Strand 4	D	215	220	anti-parallel
Strand 5	D	227	228	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	139	146	anti-parallel
Strand 4	D	151	156	anti-parallel
Strand 5	D	162	165	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	43	49	anti-parallel
Strand 4	E	210	216	anti-parallel
Strand 5	E	222	224	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	65	first strand
Strand 2	E	70	73	anti-parallel
Strand 3	E	132	137	anti-parallel
Strand 4	E	142	147	anti-parallel
Strand 5	E	153	156	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	77	first strand
Strand 2	c	287	288	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	166	first strand
Strand 2	F	37	41	anti-parallel
Strand 3	F	45	52	anti-parallel
Strand 4	F	211	218	anti-parallel
Strand 5	F	226	227	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	69	first strand
Strand 2	F	75	78	anti-parallel
Strand 3	F	136	140	anti-parallel
Strand 4	F	148	153	anti-parallel
Strand 5	F	157	160	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	169	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	47	53	anti-parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	228	230	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	73	first strand
Strand 2	G	76	82	anti-parallel
Strand 3	G	136	144	anti-parallel
Strand 4	G	148	154	anti-parallel
Strand 5	G	162	163	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	48	51	first strand
Strand 2	c	94	100	anti-parallel
Strand 3	c	121	125	anti-parallel
Strand 4	c	132	137	anti-parallel
Strand 5	c	70	75	parallel
Strand 6	c	164	170	parallel
Strand 7	c	230	236	parallel
Strand 8	c	189	193	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	211	213	first strand
Strand 2	d	55	57	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	2	4	first strand
Strand 2	d	42	47	anti-parallel
Strand 3	d	75	80	anti-parallel
Strand 4	d	85	90	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	16	20	first strand
Strand 2	d	117	121	parallel
Strand 3	d	201	204	parallel
Strand 4	d	142	143	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	8	16	first strand
Strand 2	i	19	27	anti-parallel
Strand 3	i	32	37	anti-parallel
Strand 4	i	95	97	parallel
Strand 5	i	45	50	anti-parallel
Strand 6	i	62	68	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	17	18	first strand
Strand 2	j	27	31	anti-parallel
Strand 3	j	37	42	anti-parallel
Strand 4	j	91	95	parallel
Strand 5	j	50	54	anti-parallel
Strand 6	j	63	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TM3