Analysis of interatomic Contacts of Structural Units in PDB entry:
8TM5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TM5 entry

There are 13 chains in PDB entry 8TM5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 234
B	SER 2	LYS 252
C	SER 2	ASN 239
D	MET 1	LYS 239
E	MET 1	GLU 238
F	GLY 5	SER 243
G	MET 1	ARG 245
H	ALA -41	LEU 219
I	ASN 7	LYS 201
J	TYR 3	ILE 194
c	ALA 2	THR 288
d	MET 1	PHE 264
e	LEU 43	LEU 141

There are 81 helices in PDB entry 8TM5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	9	Right-handed alpha
Helix 2	AA2	A	19	31	Right-handed alpha
Helix 3	AA3	A	79	102	Right-handed alpha
Helix 4	AA4	A	106	124	Right-handed alpha
Helix 5	AA5	A	166	178	Right-handed alpha
Helix 6	AA6	A	186	198	Right-handed alpha
Helix 7	AA7	A	222	234	Right-handed alpha
Helix 8	AA8	B	18	30	Right-handed alpha
Helix 9	AA9	B	79	102	Right-handed alpha
Helix 10	AB1	B	106	124	Right-handed alpha
Helix 11	AB2	B	167	178	Right-handed alpha
Helix 12	AB3	B	185	201	Right-handed alpha
Helix 13	AB4	B	229	252	Right-handed alpha
Helix 14	AB5	C	16	29	Right-handed alpha
Helix 15	AB6	C	76	99	Right-handed alpha
Helix 16	AB7	C	103	119	Right-handed alpha
Helix 17	AB8	C	164	176	Right-handed alpha
Helix 18	AB9	C	183	199	Right-handed alpha
Helix 19	AC1	C	221	239	Right-handed alpha
Helix 20	AC2	D	21	33	Right-handed alpha
Helix 21	AC3	D	81	103	Right-handed alpha
Helix 22	AC4	D	108	121	Right-handed alpha
Helix 23	AC5	D	173	185	Right-handed alpha
Helix 24	AC6	D	190	206	Right-handed alpha
Helix 25	AC7	D	230	239	Right-handed alpha
Helix 26	AC8	E	19	32	Right-handed alpha
Helix 27	AC9	E	77	98	Right-handed alpha
Helix 28	AD1	E	104	122	Right-handed alpha
Helix 29	AD2	E	164	175	Right-handed alpha
Helix 30	AD3	E	177	182	Right-handed 310
Helix 31	AD4	E	183	199	Right-handed alpha
Helix 32	AD5	E	225	234	Right-handed alpha
Helix 33	AD6	F	21	33	Right-handed alpha
Helix 34	AD7	F	81	104	Right-handed alpha
Helix 35	AD8	F	108	126	Right-handed alpha
Helix 36	AD9	F	169	180	Right-handed alpha
Helix 37	AE1	F	186	202	Right-handed alpha
Helix 38	AE2	F	220	222	Right-handed 310
Helix 39	AE3	F	229	243	Right-handed alpha
Helix 40	AE4	G	22	35	Right-handed alpha
Helix 41	AE5	G	83	106	Right-handed alpha
Helix 42	AE6	G	110	128	Right-handed alpha
Helix 43	AE7	G	171	185	Right-handed alpha
Helix 44	AE8	G	190	206	Right-handed alpha
Helix 45	AE9	G	231	245	Right-handed alpha
Helix 46	AF1	H	-26	-12	Right-handed alpha
Helix 47	AF2	H	48	71	Right-handed alpha
Helix 48	AF3	H	75	90	Right-handed alpha
Helix 49	AF4	H	130	142	Right-handed alpha
Helix 50	AF5	H	147	164	Right-handed alpha
Helix 51	AF6	I	56	79	Right-handed alpha
Helix 52	AF7	I	83	98	Right-handed alpha
Helix 53	AF8	I	142	154	Right-handed alpha
Helix 54	AF9	I	159	173	Right-handed alpha
Helix 55	AG1	J	49	72	Right-handed alpha
Helix 56	AG2	J	76	95	Right-handed alpha
Helix 57	AG3	J	138	146	Right-handed alpha
Helix 58	AG4	J	152	170	Right-handed alpha
Helix 59	AG5	c	17	25	Right-handed alpha
Helix 60	AG6	c	26	30	Right-handed 310
Helix 61	AG7	c	31	45	Right-handed alpha
Helix 62	AG8	c	61	66	Right-handed alpha
Helix 63	AG9	c	76	87	Right-handed alpha
Helix 64	AH1	c	142	154	Right-handed alpha
Helix 65	AH2	c	214	226	Right-handed alpha
Helix 66	AH3	c	243	249	Right-handed alpha
Helix 67	AH4	c	250	255	Right-handed 310
Helix 68	AH5	c	265	279	Right-handed alpha
Helix 69	AH6	d	26	40	Right-handed alpha
Helix 70	AH7	d	66	69	Right-handed 310
Helix 71	AH8	d	98	114	Right-handed alpha
Helix 72	AH9	d	130	137	Right-handed alpha
Helix 73	AI1	d	148	159	Right-handed alpha
Helix 74	AI2	d	185	198	Right-handed alpha
Helix 75	AI3	d	213	229	Right-handed alpha
Helix 76	AI4	e	46	54	Right-handed alpha
Helix 77	AI5	e	54	71	Right-handed alpha
Helix 78	AI6	e	73	89	Right-handed alpha
Helix 79	AI7	e	99	107	Right-handed alpha
Helix 80	AI8	e	113	118	Right-handed alpha
Helix 81	AI9	e	129	139	Right-handed alpha

There are 25 sheets in PDB entry 8TM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	43	48	anti-parallel
Strand 4	A	209	214	anti-parallel
Strand 5	A	217	220	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	72	78	anti-parallel
Strand 3	A	132	140	anti-parallel
Strand 4	A	143	149	anti-parallel
Strand 5	A	155	157	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	164	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	42	48	anti-parallel
Strand 4	B	211	219	anti-parallel
Strand 5	B	222	227	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	72	78	anti-parallel
Strand 3	B	132	140	anti-parallel
Strand 4	B	144	150	anti-parallel
Strand 5	B	156	158	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	206	207	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	32	36	anti-parallel
Strand 3	C	40	46	anti-parallel
Strand 4	C	209	212	anti-parallel
Strand 5	C	218	219	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	66	first strand
Strand 2	C	69	75	anti-parallel
Strand 3	C	129	136	anti-parallel
Strand 4	C	142	147	anti-parallel
Strand 5	C	153	156	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	170	first strand
Strand 2	D	37	42	anti-parallel
Strand 3	D	45	50	anti-parallel
Strand 4	D	216	221	anti-parallel
Strand 5	D	225	228	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	139	141	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	150	156	anti-parallel
Strand 3	D	162	165	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	E	43	49	anti-parallel
Strand 4	E	210	216	anti-parallel
Strand 5	E	222	224	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	64	first strand
Strand 2	E	70	74	anti-parallel
Strand 3	E	132	137	anti-parallel
Strand 4	E	142	147	anti-parallel
Strand 5	E	153	155	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	166	first strand
Strand 2	F	37	41	anti-parallel
Strand 3	F	45	52	anti-parallel
Strand 4	F	211	218	anti-parallel
Strand 5	F	226	227	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	74	79	anti-parallel
Strand 3	F	135	140	anti-parallel
Strand 4	F	148	152	anti-parallel
Strand 5	F	159	160	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	169	first strand
Strand 2	G	38	43	anti-parallel
Strand 3	G	47	53	anti-parallel
Strand 4	G	215	221	anti-parallel
Strand 5	G	228	229	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	71	first strand
Strand 2	G	77	82	anti-parallel
Strand 3	G	136	143	anti-parallel
Strand 4	G	149	154	anti-parallel
Strand 5	G	162	163	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	127	first strand
Strand 2	H	3	8	anti-parallel
Strand 3	H	11	16	anti-parallel
Strand 4	H	176	179	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	41	47	anti-parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	215	218	first strand
Strand 2	I	194	200	anti-parallel
Strand 3	I	185	191	anti-parallel
Strand 4	I	19	25	anti-parallel
Strand 5	I	10	15	anti-parallel
Strand 6	I	136	140	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	44	first strand
Strand 2	I	49	52	anti-parallel
Strand 3	I	108	112	anti-parallel
Strand 4	I	119	123	anti-parallel
Strand 5	I	131	133	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	129	130	first strand
Strand 2	J	6	8	anti-parallel
Strand 3	J	13	17	anti-parallel
Strand 4	J	179	184	anti-parallel
Strand 5	J	187	190	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	37	first strand
Strand 2	J	42	48	anti-parallel
Strand 3	J	100	108	anti-parallel
Strand 4	J	112	118	anti-parallel
Strand 5	J	124	126	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	56	57	first strand
Strand 2	c	49	51	anti-parallel
Strand 3	c	94	99	anti-parallel
Strand 4	c	121	125	anti-parallel
Strand 5	c	132	137	anti-parallel
Strand 6	c	70	75	parallel
Strand 7	c	163	171	parallel
Strand 8	c	230	237	parallel
Strand 9	c	188	193	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	212	213	first strand
Strand 2	d	55	58	anti-parallel
Strand 3	d	71	73	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	3	4	first strand
Strand 2	d	42	46	anti-parallel
Strand 3	d	75	80	anti-parallel
Strand 4	d	85	90	anti-parallel
Strand 5	d	16	20	parallel
Strand 6	d	120	125	parallel
Strand 7	d	203	208	parallel
Strand 8	d	139	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TM5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TM5