Analysis of interatomic Contacts of Structural Units in PDB entry:
8TM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TM9 entry

There are 2 chains in PDB entry 8TM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7TYR 231
B
 PRO 7ARG 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8TM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 30Right-handed alpha
Helix 2
AA2
A
32 63Right-handed alpha
Helix 3
AA3
A
65 89Right-handed alpha
Helix 4
AA4
A
91 122Right-handed alpha
Helix 5
AA5
A
124 148Right-handed alpha
Helix 6
AA6
A
150 180Right-handed alpha
Helix 7
AA7
A
183 206Right-handed alpha
Helix 8
AA8
A
209 230Right-handed alpha
Helix 9
AA9
B
8 29Right-handed alpha
Helix 10
AB1
B
32 53Right-handed alpha
Helix 11
AB2
B
55 60Right-handed alpha
Helix 12
AB3
B
65 87Right-handed alpha
Helix 13
AB4
B
91 122Right-handed alpha
Helix 14
AB5
B
124 148Right-handed alpha
Helix 15
AB6
B
150 181Right-handed alpha
Helix 16
AB7
B
183 207Right-handed alpha
Helix 17
AB8
B
209 232Right-handed alpha
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There are no sheets in PDB entry 8TM9
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il