Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TMB entry

There are 6 chains in PDB entry 8TMB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	LEU 351
B	LEU 17	LEU 351
C	GLU 2	LEU 351
D	MET 1	LEU 351
E	MET 1	LEU 351
H	VAL 5	VAL 5

There are 49 helices in PDB entry 8TMB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	54	Right-handed 310
Helix 2	AA2	A	69	81	Right-handed alpha
Helix 3	AA3	A	83	92	Right-handed alpha
Helix 4	AA4	A	147	156	Right-handed alpha
Helix 5	AA5	A	160	163	Right-handed 310
Helix 6	AA6	A	164	199	Right-handed alpha
Helix 7	AA7	A	204	238	Right-handed alpha
Helix 8	AA8	A	244	246	Right-handed 310
Helix 9	AA9	A	247	302	Right-handed alpha
Helix 10	AB1	A	305	310	Right-handed alpha
Helix 11	AB2	A	325	347	Right-handed alpha
Helix 12	AB3	B	46	54	Right-handed 310
Helix 13	AB4	B	69	80	Right-handed alpha
Helix 14	AB5	B	83	92	Right-handed alpha
Helix 15	AB6	B	147	156	Right-handed alpha
Helix 16	AB7	B	165	202	Right-handed alpha
Helix 17	AB8	B	205	238	Right-handed alpha
Helix 18	AB9	B	247	311	Right-handed alpha
Helix 19	AC1	B	329	349	Right-handed alpha
Helix 20	AC2	C	46	50	Right-handed 310
Helix 21	AC3	C	51	56	Right-handed alpha
Helix 22	AC4	C	69	81	Right-handed alpha
Helix 23	AC5	C	83	92	Right-handed alpha
Helix 24	AC6	C	147	153	Right-handed alpha
Helix 25	AC7	C	165	201	Right-handed alpha
Helix 26	AC8	C	206	238	Right-handed alpha
Helix 27	AC9	C	247	298	Right-handed alpha
Helix 28	AD1	C	301	312	Right-handed alpha
Helix 29	AD2	C	326	345	Right-handed alpha
Helix 30	AD3	D	46	56	Right-handed 310
Helix 31	AD4	D	69	81	Right-handed alpha
Helix 32	AD5	D	83	92	Right-handed alpha
Helix 33	AD6	D	147	156	Right-handed alpha
Helix 34	AD7	D	160	164	Right-handed 310
Helix 35	AD8	D	165	201	Right-handed alpha
Helix 36	AD9	D	206	238	Right-handed alpha
Helix 37	AE1	D	247	311	Right-handed alpha
Helix 38	AE2	D	327	349	Right-handed alpha
Helix 39	AE3	E	47	54	Right-handed 310
Helix 40	AE4	E	69	80	Right-handed alpha
Helix 41	AE5	E	83	91	Right-handed alpha
Helix 42	AE6	E	147	156	Right-handed alpha
Helix 43	AE7	E	165	202	Right-handed alpha
Helix 44	AE8	E	205	237	Right-handed alpha
Helix 45	AE9	E	244	246	Right-handed 310
Helix 46	AF1	E	247	298	Right-handed alpha
Helix 47	AF2	E	301	312	Right-handed alpha
Helix 48	AF3	E	330	348	Right-handed alpha
Helix 49	AF4	H	65	68	Right-handed 310

There are 12 sheets in PDB entry 8TMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	30	34	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	135	140	parallel
Strand 5	A	121	131	anti-parallel
Strand 6	A	106	116	anti-parallel
Strand 7	A	98	101	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	135	139	parallel
Strand 5	B	122	132	anti-parallel
Strand 6	B	106	115	anti-parallel
Strand 7	B	98	101	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	29	34	anti-parallel
Strand 3	C	63	64	anti-parallel
Strand 4	C	136	139	parallel
Strand 5	C	121	131	anti-parallel
Strand 6	C	106	116	anti-parallel
Strand 7	C	98	101	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	28	34	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	135	140	parallel
Strand 5	D	122	131	anti-parallel
Strand 6	D	106	115	anti-parallel
Strand 7	D	98	101	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	44	first strand
Strand 2	E	28	34	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	135	140	parallel
Strand 5	E	122	131	anti-parallel
Strand 6	E	106	115	anti-parallel
Strand 7	E	98	101	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	72	76	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	127	130	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	127	130	parallel
Strand 3	H	95	103	anti-parallel
Strand 4	H	119	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	107	first strand
Strand 2	H	114	115	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	107	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	47	50	anti-parallel
Strand 3	L	35	39	anti-parallel
Strand 4	L	86	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TMB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMB