Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TMC entry

There are 6 chains in PDB entry 8TMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	LEU 351
B	LEU 6	LEU 351
C	LEU 12	LEU 351
D	LYS 4	LEU 351
E	LYS 4	TRP 350
H	GLU 4	GLU 4

There are 53 helices in PDB entry 8TMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	56	Right-handed 310
Helix 2	AA2	A	69	80	Right-handed alpha
Helix 3	AA3	A	83	92	Right-handed alpha
Helix 4	AA4	A	147	157	Right-handed alpha
Helix 5	AA5	A	165	202	Right-handed alpha
Helix 6	AA6	A	204	238	Right-handed alpha
Helix 7	AA7	A	247	311	Right-handed alpha
Helix 8	AA8	A	325	348	Right-handed alpha
Helix 9	AA9	B	46	51	Right-handed alpha
Helix 10	AB1	B	52	56	Right-handed 310
Helix 11	AB2	B	69	80	Right-handed alpha
Helix 12	AB3	B	83	92	Right-handed alpha
Helix 13	AB4	B	117	120	Right-handed 310
Helix 14	AB5	B	147	157	Right-handed alpha
Helix 15	AB6	B	165	202	Right-handed alpha
Helix 16	AB7	B	206	238	Right-handed alpha
Helix 17	AB8	B	244	246	Right-handed 310
Helix 18	AB9	B	247	312	Right-handed alpha
Helix 19	AC1	B	325	349	Right-handed alpha
Helix 20	AC2	C	47	56	Right-handed 310
Helix 21	AC3	C	69	81	Right-handed alpha
Helix 22	AC4	C	83	92	Right-handed alpha
Helix 23	AC5	C	147	156	Right-handed alpha
Helix 24	AC6	C	165	202	Right-handed alpha
Helix 25	AC7	C	205	238	Right-handed alpha
Helix 26	AC8	C	244	246	Right-handed 310
Helix 27	AC9	C	247	299	Right-handed alpha
Helix 28	AD1	C	301	311	Right-handed alpha
Helix 29	AD2	C	327	347	Right-handed alpha
Helix 30	AD3	D	46	51	Right-handed alpha
Helix 31	AD4	D	52	54	Right-handed 310
Helix 32	AD5	D	69	81	Right-handed alpha
Helix 33	AD6	D	83	92	Right-handed alpha
Helix 34	AD7	D	147	157	Right-handed alpha
Helix 35	AD8	D	160	164	Right-handed 310
Helix 36	AD9	D	165	202	Right-handed alpha
Helix 37	AE1	D	204	238	Right-handed alpha
Helix 38	AE2	D	244	246	Right-handed 310
Helix 39	AE3	D	247	311	Right-handed alpha
Helix 40	AE4	D	326	348	Right-handed alpha
Helix 41	AE5	E	46	55	Right-handed 310
Helix 42	AE6	E	69	81	Right-handed alpha
Helix 43	AE7	E	83	92	Right-handed alpha
Helix 44	AE8	E	147	156	Right-handed alpha
Helix 45	AE9	E	165	202	Right-handed alpha
Helix 46	AF1	E	206	237	Right-handed alpha
Helix 47	AF2	E	244	246	Right-handed 310
Helix 48	AF3	E	247	311	Right-handed alpha
Helix 49	AF4	E	327	348	Right-handed alpha
Helix 50	AF5	H	31	34	Right-handed 310
Helix 51	AF6	H	90	94	Right-handed 310
Helix 52	AF7	F	31	35	Right-handed 310
Helix 53	AF8	G	80	84	Right-handed 310

There are 16 sheets in PDB entry 8TMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	28	34	anti-parallel
Strand 3	A	60	65	anti-parallel
Strand 4	A	135	140	parallel
Strand 5	A	123	131	anti-parallel
Strand 6	A	106	114	anti-parallel
Strand 7	A	98	101	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	135	140	parallel
Strand 5	B	121	132	anti-parallel
Strand 6	B	105	116	anti-parallel
Strand 7	B	98	101	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	28	34	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	136	140	parallel
Strand 5	C	121	131	anti-parallel
Strand 6	C	106	116	anti-parallel
Strand 7	C	98	101	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	29	34	anti-parallel
Strand 3	D	60	64	anti-parallel
Strand 4	D	135	139	parallel
Strand 5	D	122	131	anti-parallel
Strand 6	D	106	115	anti-parallel
Strand 7	D	98	101	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	44	first strand
Strand 2	E	28	34	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	135	139	parallel
Strand 5	E	122	132	anti-parallel
Strand 6	E	105	115	anti-parallel
Strand 7	E	98	101	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	20	28	anti-parallel
Strand 3	H	81	87	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	36	42	anti-parallel
Strand 4	H	95	103	anti-parallel
Strand 5	H	119	123	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	48	55	anti-parallel
Strand 3	H	36	42	anti-parallel
Strand 4	H	95	103	anti-parallel
Strand 5	H	127	129	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	107	first strand
Strand 2	H	114	115	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	90	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	26	first strand
Strand 2	F	81	86	anti-parallel
Strand 3	F	72	76	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	49	55	anti-parallel
Strand 3	F	36	42	anti-parallel
Strand 4	F	96	103	anti-parallel
Strand 5	F	119	123	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	107	first strand
Strand 2	F	114	115	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	21	26	anti-parallel
Strand 3	G	71	76	anti-parallel
Strand 4	G	63	68	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	103	107	parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	50	anti-parallel
Strand 6	G	54	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMC