Analysis of interatomic Contacts of Structural Units in PDB entry:
8TME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TME entry

There are 7 chains in PDB entry 8TME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 2	LYS 108
H	GLU 4	SER 129
A	THR 16	TRP 350
B	MET 1	LEU 351
C	THR 16	LEU 351
D	LYS 4	TRP 350
E	MET 1	TRP 350

There are 46 helices in PDB entry 8TME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	80	84	Right-handed 310
Helix 2	AA2	H	90	94	Right-handed 310
Helix 3	AA3	A	46	51	Right-handed alpha
Helix 4	AA4	A	52	56	Right-handed 310
Helix 5	AA5	A	69	81	Right-handed alpha
Helix 6	AA6	A	83	91	Right-handed alpha
Helix 7	AA7	A	147	157	Right-handed alpha
Helix 8	AA8	A	165	201	Right-handed alpha
Helix 9	AA9	A	204	238	Right-handed alpha
Helix 10	AB1	A	244	246	Right-handed 310
Helix 11	AB2	A	247	282	Right-handed alpha
Helix 12	AB3	A	283	300	Right-handed alpha
Helix 13	AB4	A	301	311	Right-handed alpha
Helix 14	AB5	A	325	349	Right-handed alpha
Helix 15	AB6	B	50	54	Right-handed 310
Helix 16	AB7	B	69	80	Right-handed alpha
Helix 17	AB8	B	83	92	Right-handed alpha
Helix 18	AB9	B	147	156	Right-handed alpha
Helix 19	AC1	B	165	202	Right-handed alpha
Helix 20	AC2	B	204	237	Right-handed alpha
Helix 21	AC3	B	244	246	Right-handed 310
Helix 22	AC4	B	247	312	Right-handed alpha
Helix 23	AC5	B	326	348	Right-handed alpha
Helix 24	AC6	C	69	80	Right-handed alpha
Helix 25	AC7	C	86	92	Right-handed alpha
Helix 26	AC8	C	147	157	Right-handed alpha
Helix 27	AC9	C	167	202	Right-handed alpha
Helix 28	AD1	C	206	238	Right-handed alpha
Helix 29	AD2	C	247	311	Right-handed alpha
Helix 30	AD3	C	325	348	Right-handed alpha
Helix 31	AD4	D	47	56	Right-handed 310
Helix 32	AD5	D	69	81	Right-handed alpha
Helix 33	AD6	D	83	92	Right-handed alpha
Helix 34	AD7	D	147	157	Right-handed alpha
Helix 35	AD8	D	165	202	Right-handed alpha
Helix 36	AD9	D	205	238	Right-handed alpha
Helix 37	AE1	D	247	312	Right-handed alpha
Helix 38	AE2	D	325	345	Right-handed alpha
Helix 39	AE3	E	50	54	Right-handed 310
Helix 40	AE4	E	69	80	Right-handed alpha
Helix 41	AE5	E	83	91	Right-handed alpha
Helix 42	AE6	E	147	156	Right-handed alpha
Helix 43	AE7	E	165	202	Right-handed alpha
Helix 44	AE8	E	206	237	Right-handed alpha
Helix 45	AE9	E	247	313	Right-handed alpha
Helix 46	AF1	E	325	346	Right-handed alpha

There are 13 sheets in PDB entry 8TME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	123	127	parallel
Strand 3	H	95	106	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	123	127	parallel
Strand 3	H	95	106	anti-parallel
Strand 4	H	112	119	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	60	64	anti-parallel
Strand 4	A	135	139	parallel
Strand 5	A	122	132	anti-parallel
Strand 6	A	106	115	anti-parallel
Strand 7	A	98	101	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	135	140	parallel
Strand 5	B	122	131	anti-parallel
Strand 6	B	106	115	anti-parallel
Strand 7	B	98	101	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	28	34	anti-parallel
Strand 3	C	43	44	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	28	34	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	135	139	parallel
Strand 5	C	122	132	anti-parallel
Strand 6	C	107	115	anti-parallel
Strand 7	C	99	100	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	44	first strand
Strand 2	D	28	34	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	135	139	parallel
Strand 5	D	126	132	anti-parallel
Strand 6	D	105	111	anti-parallel
Strand 7	D	99	101	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	121	123	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	44	first strand
Strand 2	E	28	32	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	135	140	parallel
Strand 5	E	121	132	anti-parallel
Strand 6	E	105	116	anti-parallel
Strand 7	E	98	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TME

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TME