Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TMF entry

There are 7 chains in PDB entry 8TMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 2	LYS 108
H	ILE 2	SER 129
A	LEU 17	LEU 351
B	MET 1	LEU 351
C	LEU 17	LEU 351
D	LEU 6	LEU 351
E	MET 1	LEU 351

There are 52 helices in PDB entry 8TMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	31	34	Right-handed 310
Helix 2	AA2	H	65	68	Right-handed 310
Helix 3	AA3	H	90	94	Right-handed 310
Helix 4	AA4	A	46	54	Right-handed 310
Helix 5	AA5	A	69	80	Right-handed alpha
Helix 6	AA6	A	83	92	Right-handed alpha
Helix 7	AA7	A	147	157	Right-handed alpha
Helix 8	AA8	A	160	164	Right-handed 310
Helix 9	AA9	A	165	201	Right-handed alpha
Helix 10	AB1	A	204	238	Right-handed alpha
Helix 11	AB2	A	244	246	Right-handed 310
Helix 12	AB3	A	247	281	Right-handed alpha
Helix 13	AB4	A	283	300	Right-handed alpha
Helix 14	AB5	A	301	312	Right-handed alpha
Helix 15	AB6	A	326	347	Right-handed alpha
Helix 16	AB7	A	348	350	Right-handed 310
Helix 17	AB8	B	46	56	Right-handed 310
Helix 18	AB9	B	69	81	Right-handed alpha
Helix 19	AC1	B	83	92	Right-handed alpha
Helix 20	AC2	B	147	157	Right-handed alpha
Helix 21	AC3	B	165	200	Right-handed alpha
Helix 22	AC4	B	204	238	Right-handed alpha
Helix 23	AC5	B	247	311	Right-handed alpha
Helix 24	AC6	B	322	325	Right-handed 310
Helix 25	AC7	B	326	348	Right-handed alpha
Helix 26	AC8	C	69	81	Right-handed alpha
Helix 27	AC9	C	83	91	Right-handed alpha
Helix 28	AD1	C	147	156	Right-handed alpha
Helix 29	AD2	C	166	202	Right-handed alpha
Helix 30	AD3	C	204	236	Right-handed alpha
Helix 31	AD4	C	244	246	Right-handed 310
Helix 32	AD5	C	247	311	Right-handed alpha
Helix 33	AD6	C	325	348	Right-handed alpha
Helix 34	AD7	D	46	51	Right-handed alpha
Helix 35	AD8	D	69	80	Right-handed alpha
Helix 36	AD9	D	83	91	Right-handed alpha
Helix 37	AE1	D	147	157	Right-handed alpha
Helix 38	AE2	D	165	202	Right-handed alpha
Helix 39	AE3	D	204	238	Right-handed alpha
Helix 40	AE4	D	244	246	Right-handed 310
Helix 41	AE5	D	247	311	Right-handed alpha
Helix 42	AE6	D	326	348	Right-handed alpha
Helix 43	AE7	E	46	54	Right-handed 310
Helix 44	AE8	E	69	81	Right-handed alpha
Helix 45	AE9	E	83	92	Right-handed alpha
Helix 46	AF1	E	147	156	Right-handed alpha
Helix 47	AF2	E	160	164	Right-handed 310
Helix 48	AF3	E	165	202	Right-handed alpha
Helix 49	AF4	E	204	237	Right-handed alpha
Helix 50	AF5	E	244	246	Right-handed 310
Helix 51	AF6	E	247	311	Right-handed alpha
Helix 52	AF7	E	325	349	Right-handed alpha

There are 11 sheets in PDB entry 8TMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	72	76	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	63	first strand
Strand 2	H	49	55	anti-parallel
Strand 3	H	36	42	anti-parallel
Strand 4	H	95	106	anti-parallel
Strand 5	H	112	119	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	63	first strand
Strand 2	H	49	55	anti-parallel
Strand 3	H	36	42	anti-parallel
Strand 4	H	95	106	anti-parallel
Strand 5	H	123	125	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	60	64	anti-parallel
Strand 4	A	135	139	parallel
Strand 5	A	121	132	anti-parallel
Strand 6	A	105	116	anti-parallel
Strand 7	A	99	101	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	135	140	parallel
Strand 5	B	121	131	anti-parallel
Strand 6	B	106	116	anti-parallel
Strand 7	B	98	101	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	28	34	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	135	140	parallel
Strand 5	C	123	132	anti-parallel
Strand 6	C	106	114	anti-parallel
Strand 7	C	99	101	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	28	33	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	135	139	parallel
Strand 5	D	121	132	anti-parallel
Strand 6	D	105	116	anti-parallel
Strand 7	D	99	101	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	30	first strand
Strand 2	E	61	65	anti-parallel
Strand 3	E	136	140	parallel
Strand 4	E	121	132	anti-parallel
Strand 5	E	105	116	anti-parallel
Strand 6	E	98	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMF