Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TMM entry

There are 9 chains in PDB entry 8TMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	VAL 122
L	ASP 2	LYS 108
G	ASP 2	ILE 107
F	GLU 1	THR 123
A	THR 16	TRP 350
B	MET 1	LEU 351
C	LEU 17	LEU 351
D	MET 1	LEU 351
E	MET 1	LEU 351

There are 53 helices in PDB entry 8TMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	87	91	Right-handed 310
Helix 2	AA2	G	80	84	Right-handed 310
Helix 3	AA3	F	28	31	Right-handed 310
Helix 4	AA4	F	87	91	Right-handed 310
Helix 5	AA5	A	47	55	Right-handed 310
Helix 6	AA6	A	69	80	Right-handed alpha
Helix 7	AA7	A	83	92	Right-handed alpha
Helix 8	AA8	A	147	157	Right-handed alpha
Helix 9	AA9	A	165	202	Right-handed alpha
Helix 10	AB1	A	204	238	Right-handed alpha
Helix 11	AB2	A	244	246	Right-handed 310
Helix 12	AB3	A	247	283	Right-handed alpha
Helix 13	AB4	A	285	313	Right-handed alpha
Helix 14	AB5	A	325	345	Right-handed alpha
Helix 15	AB6	B	50	56	Right-handed 310
Helix 16	AB7	B	69	81	Right-handed alpha
Helix 17	AB8	B	83	92	Right-handed alpha
Helix 18	AB9	B	147	157	Right-handed alpha
Helix 19	AC1	B	165	202	Right-handed alpha
Helix 20	AC2	B	204	239	Right-handed alpha
Helix 21	AC3	B	247	299	Right-handed alpha
Helix 22	AC4	B	301	311	Right-handed alpha
Helix 23	AC5	B	318	323	Right-handed 310
Helix 24	AC6	B	328	347	Right-handed alpha
Helix 25	AC7	C	47	49	Right-handed 310
Helix 26	AC8	C	50	56	Right-handed alpha
Helix 27	AC9	C	69	80	Right-handed alpha
Helix 28	AD1	C	83	92	Right-handed alpha
Helix 29	AD2	C	147	156	Right-handed alpha
Helix 30	AD3	C	165	202	Right-handed alpha
Helix 31	AD4	C	204	238	Right-handed alpha
Helix 32	AD5	C	244	246	Right-handed 310
Helix 33	AD6	C	247	282	Right-handed alpha
Helix 34	AD7	C	282	311	Right-handed alpha
Helix 35	AD8	C	318	323	Right-handed alpha
Helix 36	AD9	C	325	345	Right-handed alpha
Helix 37	AE1	D	50	56	Right-handed 310
Helix 38	AE2	D	69	80	Right-handed alpha
Helix 39	AE3	D	83	92	Right-handed alpha
Helix 40	AE4	D	147	157	Right-handed alpha
Helix 41	AE5	D	160	164	Right-handed 310
Helix 42	AE6	D	165	202	Right-handed alpha
Helix 43	AE7	D	205	238	Right-handed alpha
Helix 44	AE8	D	247	312	Right-handed alpha
Helix 45	AE9	D	325	349	Right-handed alpha
Helix 46	AF1	E	50	55	Right-handed 310
Helix 47	AF2	E	69	80	Right-handed alpha
Helix 48	AF3	E	83	92	Right-handed alpha
Helix 49	AF4	E	147	156	Right-handed alpha
Helix 50	AF5	E	165	202	Right-handed alpha
Helix 51	AF6	E	204	238	Right-handed alpha
Helix 52	AF7	E	247	311	Right-handed alpha
Helix 53	AF8	E	325	349	Right-handed alpha

There are 17 sheets in PDB entry 8TMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	4	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	92	103	anti-parallel
Strand 4	H	109	116	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	51	first strand
Strand 2	H	33	39	anti-parallel
Strand 3	H	92	103	anti-parallel
Strand 4	H	120	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	8	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	8	first strand
Strand 2	G	20	26	anti-parallel
Strand 3	G	71	76	anti-parallel
Strand 4	G	63	68	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	103	106	parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	50	anti-parallel
Strand 6	G	54	55	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	103	106	parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	98	99	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	120	123	parallel
Strand 3	F	92	105	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	52	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	120	123	parallel
Strand 3	F	92	105	anti-parallel
Strand 4	F	108	116	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	60	64	anti-parallel
Strand 4	A	135	139	parallel
Strand 5	A	121	132	anti-parallel
Strand 6	A	106	116	anti-parallel
Strand 7	A	98	101	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	28	33	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	135	140	parallel
Strand 5	B	119	132	anti-parallel
Strand 6	B	105	116	anti-parallel
Strand 7	B	98	101	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	28	33	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	135	140	parallel
Strand 5	C	123	132	anti-parallel
Strand 6	C	105	114	anti-parallel
Strand 7	C	100	101	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	28	34	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	135	140	parallel
Strand 5	D	122	132	anti-parallel
Strand 6	D	105	115	anti-parallel
Strand 7	D	98	101	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	44	first strand
Strand 2	E	28	33	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	135	140	parallel
Strand 5	E	119	132	anti-parallel
Strand 6	E	105	116	anti-parallel
Strand 7	E	98	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMM