Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TMP entry

There are 7 chains in PDB entry 8TMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 2	LYS 108
H	GLU 4	SER 129
A	THR 16	TRP 350
B	MET 1	LEU 351
C	THR 16	LEU 351
D	GLU 2	TRP 350
E	MET 1	TRP 350

There are 48 helices in PDB entry 8TMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	31	34	Right-handed 310
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	52	56	Right-handed 310
Helix 4	AA4	A	69	81	Right-handed alpha
Helix 5	AA5	A	83	92	Right-handed alpha
Helix 6	AA6	A	147	157	Right-handed alpha
Helix 7	AA7	A	165	202	Right-handed alpha
Helix 8	AA8	A	204	237	Right-handed alpha
Helix 9	AA9	A	244	246	Right-handed 310
Helix 10	AB1	A	247	281	Right-handed alpha
Helix 11	AB2	A	283	299	Right-handed alpha
Helix 12	AB3	A	301	312	Right-handed alpha
Helix 13	AB4	A	325	348	Right-handed alpha
Helix 14	AB5	B	46	54	Right-handed 310
Helix 15	AB6	B	69	80	Right-handed alpha
Helix 16	AB7	B	83	92	Right-handed alpha
Helix 17	AB8	B	117	120	Right-handed 310
Helix 18	AB9	B	147	157	Right-handed alpha
Helix 19	AC1	B	160	164	Right-handed 310
Helix 20	AC2	B	165	202	Right-handed alpha
Helix 21	AC3	B	204	237	Right-handed alpha
Helix 22	AC4	B	247	311	Right-handed alpha
Helix 23	AC5	B	326	348	Right-handed alpha
Helix 24	AC6	C	69	80	Right-handed alpha
Helix 25	AC7	C	83	85	Right-handed 310
Helix 26	AC8	C	86	92	Right-handed alpha
Helix 27	AC9	C	147	156	Right-handed alpha
Helix 28	AD1	C	160	164	Right-handed 310
Helix 29	AD2	C	166	202	Right-handed alpha
Helix 30	AD3	C	206	238	Right-handed alpha
Helix 31	AD4	C	247	311	Right-handed alpha
Helix 32	AD5	C	326	349	Right-handed alpha
Helix 33	AD6	D	47	54	Right-handed 310
Helix 34	AD7	D	69	80	Right-handed alpha
Helix 35	AD8	D	83	92	Right-handed alpha
Helix 36	AD9	D	147	157	Right-handed alpha
Helix 37	AE1	D	165	202	Right-handed alpha
Helix 38	AE2	D	204	239	Right-handed alpha
Helix 39	AE3	D	247	312	Right-handed alpha
Helix 40	AE4	D	325	345	Right-handed alpha
Helix 41	AE5	E	46	56	Right-handed 310
Helix 42	AE6	E	69	81	Right-handed alpha
Helix 43	AE7	E	83	92	Right-handed alpha
Helix 44	AE8	E	147	156	Right-handed alpha
Helix 45	AE9	E	165	202	Right-handed alpha
Helix 46	AF1	E	204	237	Right-handed alpha
Helix 47	AF2	E	247	313	Right-handed alpha
Helix 48	AF3	E	325	346	Right-handed alpha

There are 11 sheets in PDB entry 8TMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	8	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	123	127	parallel
Strand 3	H	95	106	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	15	first strand
Strand 2	H	123	127	parallel
Strand 3	H	95	106	anti-parallel
Strand 4	H	112	119	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	44	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	60	64	anti-parallel
Strand 4	A	135	139	parallel
Strand 5	A	121	132	anti-parallel
Strand 6	A	106	116	anti-parallel
Strand 7	A	98	101	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	44	first strand
Strand 2	B	28	34	anti-parallel
Strand 3	B	60	65	anti-parallel
Strand 4	B	135	139	parallel
Strand 5	B	121	131	anti-parallel
Strand 6	B	106	116	anti-parallel
Strand 7	B	98	101	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	44	first strand
Strand 2	C	28	34	anti-parallel
Strand 3	C	60	65	anti-parallel
Strand 4	C	135	140	parallel
Strand 5	C	122	132	anti-parallel
Strand 6	C	105	115	anti-parallel
Strand 7	C	98	99	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	28	31	anti-parallel
Strand 3	D	60	65	anti-parallel
Strand 4	D	135	139	parallel
Strand 5	D	121	132	anti-parallel
Strand 6	D	105	116	anti-parallel
Strand 7	D	99	101	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	44	first strand
Strand 2	E	28	34	anti-parallel
Strand 3	E	60	65	anti-parallel
Strand 4	E	135	140	parallel
Strand 5	E	122	132	anti-parallel
Strand 6	E	105	115	anti-parallel
Strand 7	E	98	101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMP