Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TMS entry

There are 4 chains in PDB entry 8TMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -4LEU 283
B
 SER -4LEU 283
C
 SER -4LEU 283
D
 SER -4LEU 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8TMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 25Right-handed alpha
Helix 2
AA2
A
63 67Right-handed 310
Helix 3
AA3
A
90 95Right-handed alpha
Helix 4
AA4
A
188 191Right-handed 310
Helix 5
AA5
B
18 25Right-handed alpha
Helix 6
AA6
B
63 67Right-handed 310
Helix 7
AA7
B
90 95Right-handed alpha
Helix 8
AA8
B
188 191Right-handed 310
Helix 9
AA9
C
18 25Right-handed alpha
Helix 10
AB1
C
63 67Right-handed 310
Helix 11
AB2
C
90 95Right-handed alpha
Helix 12
AB3
C
188 191Right-handed 310
Helix 13
AB4
D
18 25Right-handed alpha
Helix 14
AB5
D
63 67Right-handed 310
Helix 15
AB6
D
90 95Right-handed alpha
Helix 16
AB7
D
188 191Right-handed 310
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There are 16 sheets in PDB entry 8TMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-2 0first strand
Strand 2
C
3 6anti-parallel
Strand 3
C
31 36parallel
Strand 4
C
76 86parallel
Strand 5
C
106 115parallel
Strand 6
C
156 159parallel
Strand 7
C
176 179parallel
Strand 8
C
226 229parallel
Strand 9
C
255 256parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
42 46parallel
Strand 3
C
76 86parallel
Strand 4
C
106 115parallel
Strand 5
C
149 153parallel
Strand 6
C
169 173parallel
Strand 7
C
220 223parallel
Strand 8
C
248 252parallel
Strand 9
C
279 283parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
42 46parallel
Strand 3
A
76 86parallel
Strand 4
A
106 115parallel
Strand 5
A
149 153parallel
Strand 6
A
169 173parallel
Strand 7
A
220 223parallel
Strand 8
A
248 252parallel
Strand 9
A
279 283parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
226 229parallel
Strand 3
A
176 179parallel
Strand 4
A
156 159parallel
Strand 5
A
106 115parallel
Strand 6
A
76 86parallel
Strand 7
A
31 36parallel
Strand 8
A
3 6parallel
Strand 9
C
-2 0anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
70 72parallel
Strand 3
A
100 102parallel
Strand 4
A
121 123parallel
Strand 5
A
161 166parallel
Strand 6
A
206 211parallel
Strand 7
A
237 240parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
199 200anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
31 36parallel
Strand 3
B
76 86parallel
Strand 4
B
106 115parallel
Strand 5
B
156 159parallel
Strand 6
B
176 179parallel
Strand 7
B
226 229parallel
Strand 8
B
255 256parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
42 46parallel
Strand 3
B
76 86parallel
Strand 4
B
106 115parallel
Strand 5
B
149 153parallel
Strand 6
B
169 173parallel
Strand 7
B
220 223parallel
Strand 8
B
248 252parallel
Strand 9
B
279 283parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
70 72parallel
Strand 3
B
100 102parallel
Strand 4
B
121 123parallel
Strand 5
B
161 166parallel
Strand 6
B
206 211parallel
Strand 7
B
237 240parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
199 200anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
70 72parallel
Strand 3
C
100 102parallel
Strand 4
C
121 123parallel
Strand 5
C
161 166parallel
Strand 6
C
206 211parallel
Strand 7
C
237 240parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 186first strand
Strand 2
C
199 200anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
31 36parallel
Strand 3
D
76 86parallel
Strand 4
D
106 115parallel
Strand 5
D
156 159parallel
Strand 6
D
176 179parallel
Strand 7
D
226 229parallel
Strand 8
D
255 256parallel
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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 12first strand
Strand 2
D
42 46parallel
Strand 3
D
76 86parallel
Strand 4
D
106 115parallel
Strand 5
D
149 153parallel
Strand 6
D
169 173parallel
Strand 7
D
220 223parallel
Strand 8
D
248 252parallel
Strand 9
D
279 283parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
70 72parallel
Strand 3
D
100 102parallel
Strand 4
D
121 123parallel
Strand 5
D
161 166parallel
Strand 6
D
206 211parallel
Strand 7
D
237 240parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 186first strand
Strand 2
D
199 200anti-parallel
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