Analysis of interatomic Contacts of Structural Units in PDB entry:
8TMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TMX entry

There are 2 chains in PDB entry 8TMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ILE 268
B
 THR 3ILE 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8TMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
29 34Right-handed 310
Helix 3
AA3
A
36 41Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
63 68Right-handed alpha
Helix 6
AA6
A
70 84Right-handed alpha
Helix 7
AA7
A
95 108Right-handed alpha
Helix 8
AA8
A
135 149Right-handed alpha
Helix 9
AA9
A
149 163Right-handed alpha
Helix 10
AB1
A
168 181Right-handed alpha
Helix 11
AB2
A
182 196Right-handed alpha
Helix 12
AB3
A
198 205Right-handed 310
Helix 13
AB4
A
221 232Right-handed alpha
Helix 14
AB5
A
247 252Right-handed alpha
Helix 15
AB6
A
252 266Right-handed alpha
Helix 16
AB7
B
4 8Right-handed alpha
Helix 17
AB8
B
29 34Right-handed 310
Helix 18
AB9
B
36 40Right-handed 310
Helix 19
AC1
B
58 62Right-handed 310
Helix 20
AC2
B
70 84Right-handed alpha
Helix 21
AC3
B
95 108Right-handed alpha
Helix 22
AC4
B
135 149Right-handed alpha
Helix 23
AC5
B
149 163Right-handed alpha
Helix 24
AC6
B
168 180Right-handed alpha
Helix 25
AC7
B
182 196Right-handed alpha
Helix 26
AC8
B
198 203Right-handed alpha
Helix 27
AC9
B
221 232Right-handed alpha
Helix 28
AD1
B
247 252Right-handed alpha
Helix 29
AD2
B
252 266Right-handed alpha
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There are 2 sheets in PDB entry 8TMX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
19 23parallel
Strand 4
A
89 94parallel
Strand 5
A
112 118parallel
Strand 6
A
209 214parallel
Strand 7
A
236 241parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
19 23parallel
Strand 4
B
89 94parallel
Strand 5
B
112 118parallel
Strand 6
B
209 215parallel
Strand 7
B
236 244parallel
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