Analysis of interatomic Contacts of Structural Units in PDB entry:
8TN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TN8 entry

There are 2 chains in PDB entry 8TN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 427ALA 678
B
 GLY 427ALA 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8TN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
497 502Right-handed alpha
Helix 2
AA2
A
629 632Right-handed 310
Helix 3
AA3
A
653 657Right-handed 310
Helix 4
AA4
B
497 502Right-handed alpha
Helix 5
AA5
B
629 632Right-handed 310
Helix 6
AA6
B
653 657Right-handed 310
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There are 10 sheets in PDB entry 8TN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
481 484anti-parallel
Strand 3
A
612 620anti-parallel
Strand 4
A
541 551anti-parallel
Strand 5
A
517 533anti-parallel
Strand 6
A
506 512anti-parallel
Strand 7
A
468 471anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
481 484anti-parallel
Strand 3
A
612 620anti-parallel
Strand 4
A
541 551anti-parallel
Strand 5
A
517 533anti-parallel
Strand 6
A
668 671anti-parallel
Strand 7
A
430 433anti-parallel
Strand 8
A
488 491anti-parallel
Strand 9
A
494 496anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 455first strand
Strand 2
A
564 574anti-parallel
Strand 3
A
586 594anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 558first strand
Strand 2
A
604 607anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 628first strand
Strand 2
A
633 636anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 447first strand
Strand 2
B
436 438anti-parallel
Strand 3
B
481 484anti-parallel
Strand 4
B
612 620anti-parallel
Strand 5
B
541 551anti-parallel
Strand 6
B
517 533anti-parallel
Strand 7
B
506 512anti-parallel
Strand 8
B
468 471anti-parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 447first strand
Strand 2
B
436 438anti-parallel
Strand 3
B
481 484anti-parallel
Strand 4
B
612 620anti-parallel
Strand 5
B
541 551anti-parallel
Strand 6
B
517 533anti-parallel
Strand 7
B
668 671anti-parallel
Strand 8
B
430 433anti-parallel
Strand 9
B
488 491anti-parallel
Strand 10
B
494 496anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 455first strand
Strand 2
B
564 574anti-parallel
Strand 3
B
586 594anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
555 558first strand
Strand 2
B
604 607anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
625 628first strand
Strand 2
B
633 636anti-parallel
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