Analysis of interatomic Contacts of Structural Units in PDB entry:
8TN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TN9 entry

There is 1 chain in PDB entry 8TN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TYR 2196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8TN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 109Right-handed 310
Helix 2
AA2
A
149 156Right-handed alpha
Helix 3
AA3
A
191 195Right-handed 310
Helix 4
AA4
A
284 290Right-handed alpha
Helix 5
AA5
A
301 305Right-handed 310
Helix 6
AA6
A
482 488Right-handed alpha
Helix 7
AA7
A
524 528Right-handed 310
Helix 8
AA8
A
530 536Right-handed alpha
Helix 9
AA9
A
551 556Right-handed alpha
Helix 10
AB1
A
565 569Right-handed 310
Helix 11
AB2
A
1535 1544Right-handed alpha
Helix 12
AB3
A
1685 1689Right-handed 310
Helix 13
AB4
A
1707 1712Right-handed alpha
Helix 14
AB5
A
1860 1865Right-handed alpha
Helix 15
AB6
A
1891 1893Right-handed 310
Helix 16
AB7
A
1905 1910Right-handed 310
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There are 21 sheets in PDB entry 8TN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
4 12anti-parallel
Strand 3
A
69 74parallel
Strand 4
A
122 125anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
160 165parallel
Strand 3
A
139 144anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
205 206anti-parallel
Strand 3
A
181 189anti-parallel
Strand 4
A
225 233parallel
Strand 5
A
264 268anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
294 298parallel
Strand 3
A
276 282anti-parallel
Strand 4
A
238 243anti-parallel
Strand 5
A
257 261anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
253 255anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
402 406parallel
Strand 3
A
454 458anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
366 368anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
494 498parallel
Strand 3
A
472 478anti-parallel
Strand 4
A
418 419anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 561first strand
Strand 2
A
512 523anti-parallel
Strand 3
A
579 586parallel
Strand 4
A
620 626anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 615first strand
Strand 2
A
594 598anti-parallel
Strand 3
A
631 637anti-parallel
Strand 4
A
648 653anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1588 1595first strand
Strand 2
A
1551 1562anti-parallel
Strand 3
A
1627 1634parallel
Strand 4
A
1676 1683anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1620 1623first strand
Strand 2
A
1717 1723parallel
Strand 3
A
1697 1703anti-parallel
Strand 4
A
1643 1644anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1739 1744first strand
Strand 2
A
1797 1803parallel
Strand 3
A
1842 1847anti-parallel
Strand 4
A
1821 1823anti-parallel
Strand 5
A
1829 1831anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1746 1747first strand
Strand 2
A
1778 1779anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1791 1793first strand
Strand 2
A
1869 1875parallel
Strand 3
A
1852 1858anti-parallel
Strand 4
A
1812 1816anti-parallel
Strand 5
A
1834 1836anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1881 1882first strand
Strand 2
A
2030 2034anti-parallel
Strand 3
A
1943 1950anti-parallel
Strand 4
A
2000 2010anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1895 1897first strand
Strand 2
A
1935 1937anti-parallel
Strand 3
A
2012 2021anti-parallel
Strand 4
A
1961 1970anti-parallel
Strand 5
A
1977 1978anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1920 1921first strand
Strand 2
A
2025 2026anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2055 2056first strand
Strand 2
A
2095 2110anti-parallel
Strand 3
A
2160 2180anti-parallel
Strand 4
A
2122 2130anti-parallel
Strand 5
A
2150 2151anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2137 2138first strand
Strand 2
A
2122 2130anti-parallel
Strand 3
A
2160 2180anti-parallel
Strand 4
A
2095 2110anti-parallel
Strand 5
A
2189 2194anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2061 2062first strand
Strand 2
A
2066 2067anti-parallel
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