Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TNH entry

There are 9 chains in PDB entry 8TNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 31	VAL 505
B	VAL 518	ASP 664
C	ALA 31	VAL 505
D	PHE 519	ASP 664
E	ALA 31	VAL 505
F	PHE 519	ASP 664
H	GLN 1	SER 113
I	GLN 1	SER 113
J	GLN 1	SER 113

There are 42 helices in PDB entry 8TNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	62	Right-handed 310
Helix 2	AA2	A	96	98	Right-handed 310
Helix 3	AA3	A	99	113	Right-handed alpha
Helix 4	AA4	A	195	198	Right-handed 310
Helix 5	AA5	A	335	349	Right-handed alpha
Helix 6	AA6	A	368	373	Right-handed alpha
Helix 7	AA7	A	377	381	Right-handed 310
Helix 8	AA8	B	536	543	Right-handed alpha
Helix 9	AA9	B	572	596	Right-handed alpha
Helix 10	AB1	B	611	615	Right-handed 310
Helix 11	AB2	B	618	625	Right-handed alpha
Helix 12	AB3	B	627	635	Right-handed alpha
Helix 13	AB4	B	639	664	Right-handed alpha
Helix 14	AB5	C	58	62	Right-handed 310
Helix 15	AB6	C	96	98	Right-handed 310
Helix 16	AB7	C	99	113	Right-handed alpha
Helix 17	AB8	C	123	126	Right-handed 310
Helix 18	AB9	C	335	349	Right-handed alpha
Helix 19	AC1	C	475	479	Right-handed 310
Helix 20	AC2	D	529	534	Right-handed alpha
Helix 21	AC3	D	536	542	Right-handed alpha
Helix 22	AC4	D	572	597	Right-handed alpha
Helix 23	AC5	D	619	624	Right-handed alpha
Helix 24	AC6	D	627	635	Right-handed alpha
Helix 25	AC7	D	638	664	Right-handed alpha
Helix 26	AC8	E	58	62	Right-handed 310
Helix 27	AC9	E	70	74	Right-handed 310
Helix 28	AD1	E	94	98	Right-handed 310
Helix 29	AD2	E	99	113	Right-handed alpha
Helix 30	AD3	E	139	151	Right-handed 310
Helix 31	AD4	E	335	350	Right-handed alpha
Helix 32	AD5	E	368	373	Right-handed alpha
Helix 33	AD6	E	475	480	Right-handed alpha
Helix 34	AD7	F	529	534	Right-handed alpha
Helix 35	AD8	F	536	543	Right-handed alpha
Helix 36	AD9	F	572	596	Right-handed alpha
Helix 37	AE1	F	619	625	Right-handed alpha
Helix 38	AE2	F	627	635	Right-handed alpha
Helix 39	AE3	F	641	664	Right-handed alpha
Helix 40	AE4	H	83	87	Right-handed 310
Helix 41	AE5	I	83	87	Right-handed 310
Helix 42	AE6	J	83	87	Right-handed 310

There are 44 sheets in PDB entry 8TNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	604	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	487	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	84	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	201	202	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	286	298	anti-parallel
Strand 3	A	330	334	anti-parallel
Strand 4	A	413	421	anti-parallel
Strand 5	A	382	385	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	286	298	anti-parallel
Strand 3	A	443	452	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	312	first strand
Strand 2	A	315	322	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	395	first strand
Strand 2	A	359	361	anti-parallel
Strand 3	A	467	470	parallel
Strand 4	A	454	456	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	434	435	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	499	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	D	604	609	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	84	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	216	218	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	94	first strand
Strand 2	C	236	239	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	201	202	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	177	first strand
Strand 2	C	154	157	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	286	287	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	378	first strand
Strand 2	C	381	385	anti-parallel
Strand 3	C	416	421	anti-parallel
Strand 4	C	329	333	anti-parallel
Strand 5	C	293	298	anti-parallel
Strand 6	C	443	448	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	312	first strand
Strand 2	C	315	316	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	395	first strand
Strand 2	C	359	361	anti-parallel
Strand 3	C	467	469	parallel
Strand 4	C	455	456	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	434	435	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	487	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	84	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	216	218	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	237	239	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	177	first strand
Strand 2	E	154	158	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	189	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	162	first strand
Strand 2	E	169	170	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	272	first strand
Strand 2	E	286	287	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	416	417	first strand
Strand 2	E	330	333	anti-parallel
Strand 3	E	292	298	anti-parallel
Strand 4	E	443	449	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	305	first strand
Strand 2	E	319	320	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	312	first strand
Strand 2	E	315	316	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	395	first strand
Strand 2	E	359	361	anti-parallel
Strand 3	E	467	469	parallel
Strand 4	E	455	456	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	378	first strand
Strand 2	E	381	383	anti-parallel
Strand 3	E	420	421	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	8	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	49	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	102	103	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	107	110	parallel
Strand 3	J	88	94	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	49	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	107	110	parallel
Strand 3	J	88	94	anti-parallel
Strand 4	J	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNH