Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TNI entry

There are 11 chains in PDB entry 8TNI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 31	VAL 505
B	VAL 518	ASP 664
C	ALA 31	VAL 505
D	PHE 519	ASP 664
E	ALA 31	VAL 505
F	PHE 519	ASP 664
H	GLN 1	SER 113
I	GLN 1	SER 113
X	GLN 1	ASP 100
X	ASP 100	SER 112
J	GLN 1	LEU 1106

There are 42 helices in PDB entry 8TNI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	62	Right-handed 310
Helix 2	AA2	A	99	116	Right-handed alpha
Helix 3	AA3	A	139	151	Right-handed 310
Helix 4	AA4	A	177	179	Right-handed 310
Helix 5	AA5	A	335	350	Right-handed alpha
Helix 6	AA6	A	476	481	Right-handed alpha
Helix 7	AA7	B	529	534	Right-handed alpha
Helix 8	AA8	B	536	543	Right-handed alpha
Helix 9	AA9	B	544	546	Right-handed 310
Helix 10	AB1	B	572	596	Right-handed alpha
Helix 11	AB2	B	618	626	Right-handed alpha
Helix 12	AB3	B	627	635	Right-handed alpha
Helix 13	AB4	B	638	663	Right-handed alpha
Helix 14	AB5	C	99	116	Right-handed alpha
Helix 15	AB6	C	139	151	Right-handed 310
Helix 16	AB7	C	177	179	Right-handed 310
Helix 17	AB8	C	195	198	Right-handed 310
Helix 18	AB9	C	335	350	Right-handed alpha
Helix 19	AC1	C	351	353	Right-handed 310
Helix 20	AC2	C	377	381	Right-handed 310
Helix 21	AC3	C	476	481	Right-handed alpha
Helix 22	AC4	D	529	534	Right-handed alpha
Helix 23	AC5	D	536	543	Right-handed alpha
Helix 24	AC6	D	573	596	Right-handed alpha
Helix 25	AC7	D	618	625	Right-handed alpha
Helix 26	AC8	D	627	635	Right-handed alpha
Helix 27	AC9	D	638	664	Right-handed alpha
Helix 28	AD1	E	58	62	Right-handed 310
Helix 29	AD2	E	70	74	Right-handed 310
Helix 30	AD3	E	94	97	Right-handed 310
Helix 31	AD4	E	98	116	Right-handed alpha
Helix 32	AD5	E	335	350	Right-handed alpha
Helix 33	AD6	E	351	354	Right-handed 310
Helix 34	AD7	F	523	527	Right-handed 310
Helix 35	AD8	F	529	534	Right-handed alpha
Helix 36	AD9	F	536	541	Right-handed alpha
Helix 37	AE1	F	572	596	Right-handed alpha
Helix 38	AE2	F	619	625	Right-handed alpha
Helix 39	AE3	F	627	635	Right-handed alpha
Helix 40	AE4	F	641	664	Right-handed alpha
Helix 41	AE5	X	83	87	Right-handed 310
Helix 42	AE6	J	1079	1083	Right-handed 310

There are 42 sheets in PDB entry 8TNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	499	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	243	245	anti-parallel
Strand 5	A	83	85	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	176	first strand
Strand 2	A	155	162	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	189	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	434	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	452	456	anti-parallel
Strand 3	A	466	470	anti-parallel
Strand 4	A	359	361	parallel
Strand 5	A	393	395	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	417	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	294	297	anti-parallel
Strand 4	A	444	447	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	316	319	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	499	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	D	604	609	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	487	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	85	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	175	first strand
Strand 2	C	155	162	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	189	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	434	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	285	287	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	417	first strand
Strand 2	C	330	334	anti-parallel
Strand 3	C	293	298	anti-parallel
Strand 4	C	443	444	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	417	first strand
Strand 2	C	330	334	anti-parallel
Strand 3	C	293	298	anti-parallel
Strand 4	C	447	448	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	C	316	318	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	467	470	parallel
Strand 3	C	454	455	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	383	first strand
Strand 2	C	420	421	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	499	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	F	603	604	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	487	491	anti-parallel
Strand 3	E	223	226	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	237	239	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	133	first strand
Strand 2	E	155	159	anti-parallel
Strand 3	E	172	176	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	X	100	100	anti-parallel
Strand 3	X	100	100	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	183	first strand
Strand 2	E	191	193	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	283	287	anti-parallel
Strand 3	E	452	455	anti-parallel
Strand 4	E	469	470	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	413	417	first strand
Strand 2	E	330	334	anti-parallel
Strand 3	E	292	297	anti-parallel
Strand 4	E	444	449	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	308	first strand
Strand 2	E	316	320	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	378	first strand
Strand 2	E	381	385	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	434	435	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	70	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	90	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	51	first strand
Strand 2	H	33	37	anti-parallel
Strand 3	H	92	95	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	17	24	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	68	70	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	90	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	47	51	first strand
Strand 2	I	33	37	anti-parallel
Strand 3	I	92	95	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	4	7	first strand
Strand 2	X	19	24	anti-parallel
Strand 3	X	77	82	anti-parallel
Strand 4	X	67	72	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	11	12	first strand
Strand 2	X	107	111	parallel
Strand 3	X	88	93	anti-parallel
Strand 4	X	34	39	anti-parallel
Strand 5	X	45	51	anti-parallel
Strand 6	X	57	58	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	17	24	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	68	71	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	109	111	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	51	first strand
Strand 2	J	33	39	anti-parallel
Strand 3	J	92	95	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1009	1013	first strand
Strand 2	J	1102	1106	parallel
Strand 3	J	1085	1090	anti-parallel
Strand 4	J	1033	1038	anti-parallel
Strand 5	J	1044	1048	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1009	1013	first strand
Strand 2	J	1102	1106	parallel
Strand 3	J	1085	1090	anti-parallel
Strand 4	J	1097	1098	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1019	1024	first strand
Strand 2	J	1070	1075	anti-parallel
Strand 3	J	1062	1067	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TNI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNI