Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TNN entry

There are 4 chains in PDB entry 8TNN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 17	TYR 674
B	TYR 26	ALA 132
C	ILE 42	SER 221
D	ALA 18	GLY 382

There are 75 helices in PDB entry 8TNN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	47	Right-handed alpha
Helix 2	AA2	A	51	59	Right-handed alpha
Helix 3	AA3	A	64	75	Right-handed alpha
Helix 4	AA4	A	123	131	Right-handed alpha
Helix 5	AA5	A	143	148	Right-handed alpha
Helix 6	AA6	A	212	215	Right-handed 310
Helix 7	AA7	A	231	240	Right-handed alpha
Helix 8	AA8	A	245	256	Right-handed alpha
Helix 9	AA9	A	257	276	Right-handed alpha
Helix 10	AB1	A	284	308	Right-handed alpha
Helix 11	AB2	A	315	336	Right-handed alpha
Helix 12	AB3	A	345	358	Right-handed alpha
Helix 13	AB4	A	359	367	Right-handed 310
Helix 14	AB5	A	368	383	Right-handed alpha
Helix 15	AB6	A	391	407	Right-handed alpha
Helix 16	AB7	A	414	434	Right-handed alpha
Helix 17	AB8	A	439	454	Right-handed alpha
Helix 18	AB9	A	455	469	Right-handed alpha
Helix 19	AC1	A	470	474	Right-handed 310
Helix 20	AC2	A	476	481	Right-handed 310
Helix 21	AC3	A	487	494	Right-handed alpha
Helix 22	AC4	A	502	517	Right-handed alpha
Helix 23	AC5	A	531	535	Right-handed 310
Helix 24	AC6	A	636	645	Right-handed alpha
Helix 25	AC7	B	41	45	Right-handed 310
Helix 26	AC8	B	81	95	Right-handed alpha
Helix 27	AC9	B	102	117	Right-handed alpha
Helix 28	AD1	B	120	124	Right-handed 310
Helix 29	AD2	C	127	136	Right-handed alpha
Helix 30	AD3	C	144	148	Right-handed 310
Helix 31	AD4	C	149	155	Right-handed alpha
Helix 32	AD5	D	40	47	Right-handed alpha
Helix 33	AD6	D	51	59	Right-handed alpha
Helix 34	AD7	D	64	75	Right-handed alpha
Helix 35	AD8	D	123	131	Right-handed alpha
Helix 36	AD9	D	143	148	Right-handed alpha
Helix 37	AE1	D	212	216	Right-handed alpha
Helix 38	AE2	D	231	242	Right-handed alpha
Helix 39	AE3	D	245	256	Right-handed alpha
Helix 40	AE4	D	257	274	Right-handed alpha
Helix 41	AE5	D	275	277	Right-handed 310
Helix 42	AE6	D	284	309	Right-handed alpha
Helix 43	AE7	D	316	321	Right-handed alpha
Helix 44	AE8	D	321	337	Right-handed alpha
Helix 45	AE9	D	345	358	Right-handed alpha
Helix 46	AF1	D	360	367	Right-handed 310
Helix 47	AF2	D	368	383	Right-handed alpha
Helix 48	AF3	D	391	407	Right-handed alpha
Helix 49	AF4	D	414	434	Right-handed alpha
Helix 50	AF5	D	439	454	Right-handed alpha
Helix 51	AF6	D	455	469	Right-handed alpha
Helix 52	AF7	D	470	474	Right-handed 310
Helix 53	AF8	D	476	481	Right-handed 310
Helix 54	AF9	D	487	494	Right-handed alpha
Helix 55	AG1	D	502	517	Right-handed alpha
Helix 56	AG2	D	636	646	Right-handed alpha
Helix 57	AG3	E	82	95	Right-handed alpha
Helix 58	AG4	E	102	117	Right-handed alpha
Helix 59	AG5	E	120	124	Right-handed 310
Helix 60	AG6	F	127	134	Right-handed alpha
Helix 61	AG7	F	148	155	Right-handed alpha
Helix 62	AG8	G	25	29	Right-handed 310
Helix 63	AG9	G	120	126	Right-handed alpha
Helix 64	AH1	G	180	184	Right-handed 310
Helix 65	AH2	H	65	68	Right-handed 310
Helix 66	AH3	H	90	94	Right-handed 310
Helix 67	AH4	H	192	196	Right-handed 310
Helix 68	AH5	H	208	211	Right-handed 310
Helix 69	AH6	I	25	29	Right-handed 310
Helix 70	AH7	I	120	126	Right-handed alpha
Helix 71	AH8	I	180	184	Right-handed 310
Helix 72	AH9	J	65	68	Right-handed 310
Helix 73	AI1	J	90	94	Right-handed 310
Helix 74	AI2	J	192	196	Right-handed 310
Helix 75	AI3	J	208	211	Right-handed 310

There are 41 sheets in PDB entry 8TNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	23	27	anti-parallel
Strand 3	B	47	50	parallel
Strand 4	B	62	65	anti-parallel
Strand 5	B	77	80	anti-parallel

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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	167	173	anti-parallel
Strand 4	A	177	185	anti-parallel
Strand 5	A	191	200	anti-parallel
Strand 6	A	224	230	anti-parallel
Strand 7	A	217	220	anti-parallel
Strand 8	A	81	83	parallel
Strand 9	D	81	83	anti-parallel
Strand 10	D	217	220	parallel
Strand 11	D	224	229	anti-parallel
Strand 12	D	191	200	anti-parallel
Strand 13	D	177	185	anti-parallel
Strand 14	D	167	173	anti-parallel
Strand 15	D	156	162	anti-parallel
Strand 16	D	339	341	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	119	122	parallel
Strand 3	A	312	314	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	C	75	76	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	546	first strand
Strand 2	A	550	555	anti-parallel
Strand 3	A	578	583	anti-parallel
Strand 4	A	566	567	anti-parallel
Strand 5	A	597	598	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	602	first strand
Strand 2	A	667	670	parallel
Strand 3	A	656	661	anti-parallel
Strand 4	A	618	623	anti-parallel
Strand 5	A	627	633	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	215	219	anti-parallel
Strand 4	C	139	141	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	193	195	anti-parallel
Strand 3	C	203	204	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	175	176	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	39	first strand
Strand 2	D	22	28	anti-parallel
Strand 3	E	47	50	parallel
Strand 4	E	61	64	anti-parallel
Strand 5	E	78	81	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	119	122	parallel
Strand 3	D	312	313	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	F	75	76	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	547	first strand
Strand 2	D	550	555	anti-parallel
Strand 3	D	578	580	anti-parallel
Strand 4	D	566	567	anti-parallel
Strand 5	D	597	598	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	601	602	first strand
Strand 2	D	667	670	parallel
Strand 3	D	656	661	anti-parallel
Strand 4	D	618	623	anti-parallel
Strand 5	D	628	633	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	111	first strand
Strand 2	F	114	118	anti-parallel
Strand 3	F	215	219	anti-parallel
Strand 4	F	140	141	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	164	first strand
Strand 2	F	193	195	anti-parallel
Strand 3	F	203	204	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	167	first strand
Strand 2	F	175	176	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	12	first strand
Strand 2	G	100	105	parallel
Strand 3	G	83	89	anti-parallel
Strand 4	G	32	36	anti-parallel
Strand 5	G	43	46	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	12	first strand
Strand 2	G	100	105	parallel
Strand 3	G	83	89	anti-parallel
Strand 4	G	94	96	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	22	first strand
Strand 2	G	68	73	anti-parallel
Strand 3	G	60	65	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	113	117	first strand
Strand 2	G	129	138	anti-parallel
Strand 3	G	171	179	anti-parallel
Strand 4	G	158	160	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	113	117	first strand
Strand 2	G	129	138	anti-parallel
Strand 3	G	171	179	anti-parallel
Strand 4	G	164	165	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	143	148	first strand
Strand 2	G	191	196	anti-parallel
Strand 3	G	199	203	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	15	25	anti-parallel
Strand 3	H	81	89	anti-parallel
Strand 4	H	71	72	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	15	25	anti-parallel
Strand 3	H	81	89	anti-parallel
Strand 4	H	75	76	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	35	42	anti-parallel
Strand 5	H	46	55	anti-parallel
Strand 6	H	59	63	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	129	first strand
Strand 2	H	143	152	anti-parallel
Strand 3	H	183	191	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	129	first strand
Strand 2	H	143	152	anti-parallel
Strand 3	H	183	191	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	201	207	anti-parallel
Strand 3	H	212	218	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	12	first strand
Strand 2	I	100	105	parallel
Strand 3	I	83	89	anti-parallel
Strand 4	I	32	36	anti-parallel
Strand 5	I	43	46	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	12	first strand
Strand 2	I	100	105	parallel
Strand 3	I	83	89	anti-parallel
Strand 4	I	94	96	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	22	first strand
Strand 2	I	68	73	anti-parallel
Strand 3	I	60	65	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	113	115	first strand
Strand 2	I	129	138	anti-parallel
Strand 3	I	171	179	anti-parallel
Strand 4	I	158	159	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	113	115	first strand
Strand 2	I	129	138	anti-parallel
Strand 3	I	171	179	anti-parallel
Strand 4	I	164	165	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	152	154	first strand
Strand 2	I	143	149	anti-parallel
Strand 3	I	190	196	anti-parallel
Strand 4	I	199	200	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	81	86	anti-parallel
Strand 4	J	71	72	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	81	86	anti-parallel
Strand 4	J	75	76	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	114	118	parallel
Strand 3	J	95	102	anti-parallel
Strand 4	J	35	42	anti-parallel
Strand 5	J	46	55	anti-parallel
Strand 6	J	59	63	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	114	118	parallel
Strand 3	J	95	102	anti-parallel
Strand 4	J	107	110	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	127	129	first strand
Strand 2	J	143	152	anti-parallel
Strand 3	J	183	191	anti-parallel
Strand 4	J	170	172	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	158	161	first strand
Strand 2	J	202	207	anti-parallel
Strand 3	J	212	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TNN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNN