Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TNV entry

There are 2 chains in PDB entry 8TNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LYS 392
B
 GLY 0LYS 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8TNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
11 28Right-handed alpha
Helix 3
AA3
A
33 39Right-handed alpha
Helix 4
AA4
A
63 82Right-handed alpha
Helix 5
AA5
A
101 106Right-handed alpha
Helix 6
AA6
A
110 114Right-handed 310
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
144 156Right-handed alpha
Helix 9
AA9
A
158 179Right-handed alpha
Helix 10
AB1
A
190 194Right-handed 310
Helix 11
AB2
A
195 218Right-handed alpha
Helix 12
AB3
A
230 234Right-handed 310
Helix 13
AB4
A
246 252Right-handed alpha
Helix 14
AB5
A
254 259Right-handed alpha
Helix 15
AB6
A
260 265Right-handed 310
Helix 16
AB7
A
272 276Right-handed 310
Helix 17
AB8
A
277 289Right-handed alpha
Helix 18
AB9
A
347 354Right-handed alpha
Helix 19
AC1
A
377 381Right-handed 310
Helix 20
AC2
B
6 10Right-handed 310
Helix 21
AC3
B
11 28Right-handed alpha
Helix 22
AC4
B
33 39Right-handed alpha
Helix 23
AC5
B
63 82Right-handed alpha
Helix 24
AC6
B
101 106Right-handed alpha
Helix 25
AC7
B
110 114Right-handed 310
Helix 26
AC8
B
131 136Right-handed 310
Helix 27
AC9
B
144 156Right-handed alpha
Helix 28
AD1
B
158 179Right-handed alpha
Helix 29
AD2
B
190 194Right-handed 310
Helix 30
AD3
B
195 219Right-handed alpha
Helix 31
AD4
B
230 234Right-handed 310
Helix 32
AD5
B
246 252Right-handed alpha
Helix 33
AD6
B
254 259Right-handed alpha
Helix 34
AD7
B
260 265Right-handed 310
Helix 35
AD8
B
277 289Right-handed alpha
Helix 36
AD9
B
347 354Right-handed alpha
Helix 37
AE1
B
377 381Right-handed 310
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There are 10 sheets in PDB entry 8TNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
267 268parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
52 54anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 346first strand
Strand 2
A
293 298anti-parallel
Strand 3
A
385 389anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 328first strand
Strand 2
A
307 315anti-parallel
Strand 3
A
362 363anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 328first strand
Strand 2
A
307 315anti-parallel
Strand 3
A
366 370anti-parallel
Strand 4
A
375 376anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
267 268parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
52 54anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 346first strand
Strand 2
B
293 298anti-parallel
Strand 3
B
385 389anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 328first strand
Strand 2
B
307 315anti-parallel
Strand 3
B
362 363anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 328first strand
Strand 2
B
307 315anti-parallel
Strand 3
B
366 370anti-parallel
Strand 4
B
375 376anti-parallel
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