Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TNW entry

There are 2 chains in PDB entry 8TNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 52ASN 724
B
 HIS 52ASN 724
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8TNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 77Right-handed alpha
Helix 2
AA2
A
84 93Right-handed alpha
Helix 3
AA3
A
94 99Right-handed alpha
Helix 4
AA4
A
103 113Right-handed alpha
Helix 5
AA5
A
114 133Right-handed alpha
Helix 6
AA6
A
136 154Right-handed alpha
Helix 7
AA7
A
165 184Right-handed alpha
Helix 8
AA8
A
214 240Right-handed alpha
Helix 9
AA9
A
241 248Right-handed 310
Helix 10
AB1
A
249 274Right-handed alpha
Helix 11
AB2
A
284 296Right-handed alpha
Helix 12
AB3
A
303 316Right-handed alpha
Helix 13
AB4
A
335 351Right-handed alpha
Helix 14
AB5
A
352 356Right-handed 310
Helix 15
AB6
A
382 408Right-handed alpha
Helix 16
AB7
A
413 424Right-handed alpha
Helix 17
AB8
A
426 431Right-handed alpha
Helix 18
AB9
A
439 449Right-handed alpha
Helix 19
AC1
A
454 470Right-handed alpha
Helix 20
AC2
A
472 476Right-handed 310
Helix 21
AC3
A
480 496Right-handed alpha
Helix 22
AC4
A
497 499Right-handed 310
Helix 23
AC5
A
500 506Right-handed alpha
Helix 24
AC6
A
508 524Right-handed alpha
Helix 25
AC7
A
526 548Right-handed alpha
Helix 26
AC8
A
591 603Right-handed alpha
Helix 27
AC9
A
605 616Right-handed alpha
Helix 28
AD1
A
660 678Right-handed alpha
Helix 29
AD2
A
687 697Right-handed alpha
Helix 30
AD3
A
711 724Right-handed alpha
Helix 31
AD4
B
66 77Right-handed alpha
Helix 32
AD5
B
84 93Right-handed alpha
Helix 33
AD6
B
94 99Right-handed alpha
Helix 34
AD7
B
103 113Right-handed alpha
Helix 35
AD8
B
114 133Right-handed alpha
Helix 36
AD9
B
136 154Right-handed alpha
Helix 37
AE1
B
165 184Right-handed alpha
Helix 38
AE2
B
214 240Right-handed alpha
Helix 39
AE3
B
241 248Right-handed 310
Helix 40
AE4
B
249 274Right-handed alpha
Helix 41
AE5
B
284 296Right-handed alpha
Helix 42
AE6
B
303 316Right-handed alpha
Helix 43
AE7
B
335 351Right-handed alpha
Helix 44
AE8
B
352 356Right-handed 310
Helix 45
AE9
B
382 408Right-handed alpha
Helix 46
AF1
B
413 424Right-handed alpha
Helix 47
AF2
B
426 431Right-handed alpha
Helix 48
AF3
B
439 449Right-handed alpha
Helix 49
AF4
B
454 470Right-handed alpha
Helix 50
AF5
B
472 476Right-handed 310
Helix 51
AF6
B
480 496Right-handed alpha
Helix 52
AF7
B
497 499Right-handed 310
Helix 53
AF8
B
500 506Right-handed alpha
Helix 54
AF9
B
508 524Right-handed alpha
Helix 55
AG1
B
526 548Right-handed alpha
Helix 56
AG2
B
591 603Right-handed alpha
Helix 57
AG3
B
605 616Right-handed alpha
Helix 58
AG4
B
660 678Right-handed alpha
Helix 59
AG5
B
687 697Right-handed alpha
Helix 60
AG6
B
711 724Right-handed alpha
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There are 4 sheets in PDB entry 8TNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
437 438anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
550 556anti-parallel
Strand 3
A
578 584anti-parallel
Strand 4
A
648 652parallel
Strand 5
A
680 684parallel
Strand 6
A
708 709parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
437 438anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
563 565first strand
Strand 2
B
550 556anti-parallel
Strand 3
B
578 584anti-parallel
Strand 4
B
648 652parallel
Strand 5
B
680 684parallel
Strand 6
B
708 709parallel
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