Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TNX entry

There are 2 chains in PDB entry 8TNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 52ASN 724
B
 HIS 52ASN 724
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8TNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 93Right-handed alpha
Helix 2
AA2
A
94 102Right-handed alpha
Helix 3
AA3
A
110 134Right-handed alpha
Helix 4
AA4
A
136 155Right-handed alpha
Helix 5
AA5
A
165 184Right-handed alpha
Helix 6
AA6
A
213 239Right-handed alpha
Helix 7
AA7
A
241 248Right-handed 310
Helix 8
AA8
A
255 273Right-handed alpha
Helix 9
AA9
A
284 296Right-handed alpha
Helix 10
AB1
A
297 300Right-handed 310
Helix 11
AB2
A
301 316Right-handed alpha
Helix 12
AB3
A
336 348Right-handed alpha
Helix 13
AB4
A
375 377Right-handed 310
Helix 14
AB5
A
378 396Right-handed alpha
Helix 15
AB6
A
396 408Right-handed alpha
Helix 16
AB7
A
413 424Right-handed alpha
Helix 17
AB8
A
425 426Right-handed 310
Helix 18
AB9
A
427 432Right-handed 310
Helix 19
AC1
A
442 450Right-handed alpha
Helix 20
AC2
A
454 469Right-handed alpha
Helix 21
AC3
A
472 476Right-handed 310
Helix 22
AC4
A
480 489Right-handed alpha
Helix 23
AC5
A
493 497Right-handed 310
Helix 24
AC6
A
500 508Right-handed alpha
Helix 25
AC7
A
508 525Right-handed alpha
Helix 26
AC8
A
526 547Right-handed alpha
Helix 27
AC9
A
591 602Right-handed alpha
Helix 28
AD1
A
605 614Right-handed alpha
Helix 29
AD2
A
660 678Right-handed alpha
Helix 30
AD3
A
687 697Right-handed alpha
Helix 31
AD4
A
711 724Right-handed alpha
Helix 32
AD5
B
88 93Right-handed alpha
Helix 33
AD6
B
94 102Right-handed alpha
Helix 34
AD7
B
110 134Right-handed alpha
Helix 35
AD8
B
136 155Right-handed alpha
Helix 36
AD9
B
165 184Right-handed alpha
Helix 37
AE1
B
213 239Right-handed alpha
Helix 38
AE2
B
241 248Right-handed 310
Helix 39
AE3
B
255 273Right-handed alpha
Helix 40
AE4
B
284 296Right-handed alpha
Helix 41
AE5
B
297 300Right-handed 310
Helix 42
AE6
B
301 316Right-handed alpha
Helix 43
AE7
B
336 348Right-handed alpha
Helix 44
AE8
B
375 377Right-handed 310
Helix 45
AE9
B
378 396Right-handed alpha
Helix 46
AF1
B
396 408Right-handed alpha
Helix 47
AF2
B
413 424Right-handed alpha
Helix 48
AF3
B
425 426Right-handed 310
Helix 49
AF4
B
427 432Right-handed 310
Helix 50
AF5
B
442 450Right-handed alpha
Helix 51
AF6
B
454 469Right-handed alpha
Helix 52
AF7
B
472 476Right-handed 310
Helix 53
AF8
B
480 489Right-handed alpha
Helix 54
AF9
B
493 497Right-handed 310
Helix 55
AG1
B
500 508Right-handed alpha
Helix 56
AG2
B
508 525Right-handed alpha
Helix 57
AG3
B
526 547Right-handed alpha
Helix 58
AG4
B
591 602Right-handed alpha
Helix 59
AG5
B
605 614Right-handed alpha
Helix 60
AG6
B
660 678Right-handed alpha
Helix 61
AG7
B
687 697Right-handed alpha
Helix 62
AG8
B
711 724Right-handed alpha
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There are 4 sheets in PDB entry 8TNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
437 438anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
551 556anti-parallel
Strand 3
A
578 583anti-parallel
Strand 4
A
648 652parallel
Strand 5
A
680 684parallel
Strand 6
A
708 709parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
437 438anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
563 565first strand
Strand 2
B
551 556anti-parallel
Strand 3
B
578 583anti-parallel
Strand 4
B
648 652parallel
Strand 5
B
680 684parallel
Strand 6
B
708 709parallel
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