Analysis of interatomic Contacts of Structural Units in PDB entry:
8TNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TNY entry

There are 2 chains in PDB entry 8TNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 52ASN 724
A
 HIS 52ASN 724
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8TNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
114 123Right-handed alpha
Helix 2
AA2
B
123 134Right-handed alpha
Helix 3
AA3
B
136 154Right-handed alpha
Helix 4
AA4
B
165 184Right-handed alpha
Helix 5
AA5
B
214 240Right-handed alpha
Helix 6
AA6
B
241 247Right-handed 310
Helix 7
AA7
B
250 273Right-handed alpha
Helix 8
AA8
B
284 296Right-handed alpha
Helix 9
AA9
B
303 316Right-handed alpha
Helix 10
AB1
B
335 351Right-handed alpha
Helix 11
AB2
B
352 356Right-handed 310
Helix 12
AB3
B
378 408Right-handed alpha
Helix 13
AB4
B
413 424Right-handed alpha
Helix 14
AB5
B
427 432Right-handed 310
Helix 15
AB6
B
439 447Right-handed alpha
Helix 16
AB7
B
455 470Right-handed alpha
Helix 17
AB8
B
471 475Right-handed 310
Helix 18
AB9
B
479 496Right-handed alpha
Helix 19
AC1
B
497 499Right-handed 310
Helix 20
AC2
B
500 508Right-handed alpha
Helix 21
AC3
B
508 524Right-handed alpha
Helix 22
AC4
B
526 548Right-handed alpha
Helix 23
AC5
B
591 603Right-handed alpha
Helix 24
AC6
B
605 616Right-handed alpha
Helix 25
AC7
B
660 678Right-handed alpha
Helix 26
AC8
B
687 697Right-handed alpha
Helix 27
AC9
B
711 724Right-handed alpha
Helix 28
AD1
A
114 123Right-handed alpha
Helix 29
AD2
A
123 134Right-handed alpha
Helix 30
AD3
A
136 154Right-handed alpha
Helix 31
AD4
A
165 184Right-handed alpha
Helix 32
AD5
A
214 240Right-handed alpha
Helix 33
AD6
A
241 247Right-handed 310
Helix 34
AD7
A
250 273Right-handed alpha
Helix 35
AD8
A
284 296Right-handed alpha
Helix 36
AD9
A
303 316Right-handed alpha
Helix 37
AE1
A
335 351Right-handed alpha
Helix 38
AE2
A
352 356Right-handed 310
Helix 39
AE3
A
378 408Right-handed alpha
Helix 40
AE4
A
413 424Right-handed alpha
Helix 41
AE5
A
427 432Right-handed 310
Helix 42
AE6
A
439 447Right-handed alpha
Helix 43
AE7
A
455 470Right-handed alpha
Helix 44
AE8
A
471 475Right-handed 310
Helix 45
AE9
A
479 496Right-handed alpha
Helix 46
AF1
A
497 499Right-handed 310
Helix 47
AF2
A
500 508Right-handed alpha
Helix 48
AF3
A
508 524Right-handed alpha
Helix 49
AF4
A
526 548Right-handed alpha
Helix 50
AF5
A
591 603Right-handed alpha
Helix 51
AF6
A
605 616Right-handed alpha
Helix 52
AF7
A
660 678Right-handed alpha
Helix 53
AF8
A
687 697Right-handed alpha
Helix 54
AF9
A
711 724Right-handed alpha
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There are 4 sheets in PDB entry 8TNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
437 438anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
563 565first strand
Strand 2
B
551 556anti-parallel
Strand 3
B
578 583anti-parallel
Strand 4
B
648 652parallel
Strand 5
B
680 684parallel
Strand 6
B
708 709parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
437 438anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 565first strand
Strand 2
A
551 556anti-parallel
Strand 3
A
578 583anti-parallel
Strand 4
A
648 652parallel
Strand 5
A
680 684parallel
Strand 6
A
708 709parallel
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