Analysis of interatomic Contacts of Structural Units in PDB entry:
8TO3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TO3 entry

There are 4 chains in PDB entry 8TO3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ALA 702	ASP 1008
A	ALA 702	MET 1007
B	ALA 702	ASP 1014
C	ALA 702	ASP 1014

There are 63 helices in PDB entry 8TO3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	708	710	Right-handed 310
Helix 2	AA2	D	756	767	Right-handed alpha
Helix 3	AA3	D	797	805	Right-handed alpha
Helix 4	AA4	D	806	809	Right-handed 310
Helix 5	AA5	D	810	831	Right-handed alpha
Helix 6	AA6	D	839	841	Right-handed 310
Helix 7	AA7	D	857	862	Right-handed alpha
Helix 8	AA8	D	877	881	Right-handed 310
Helix 9	AA9	D	882	889	Right-handed alpha
Helix 10	AB1	D	892	909	Right-handed alpha
Helix 11	AB2	D	919	921	Right-handed 310
Helix 12	AB3	D	922	929	Right-handed alpha
Helix 13	AB4	D	940	951	Right-handed alpha
Helix 14	AB5	D	954	958	Right-handed 310
Helix 15	AB6	D	960	973	Right-handed alpha
Helix 16	AB7	D	974	978	Right-handed 310
Helix 17	AB8	D	983	987	Right-handed 310
Helix 18	AB9	D	991	1003	Right-handed alpha
Helix 19	AC1	A	708	710	Right-handed 310
Helix 20	AC2	A	754	768	Right-handed alpha
Helix 21	AC3	A	797	805	Right-handed alpha
Helix 22	AC4	A	810	831	Right-handed alpha
Helix 23	AC5	A	839	841	Right-handed 310
Helix 24	AC6	A	882	889	Right-handed alpha
Helix 25	AC7	A	892	909	Right-handed alpha
Helix 26	AC8	A	919	921	Right-handed 310
Helix 27	AC9	A	922	929	Right-handed alpha
Helix 28	AD1	A	940	951	Right-handed alpha
Helix 29	AD2	A	954	958	Right-handed 310
Helix 30	AD3	A	960	973	Right-handed alpha
Helix 31	AD4	A	974	979	Right-handed alpha
Helix 32	AD5	A	991	1003	Right-handed alpha
Helix 33	AD6	B	708	710	Right-handed 310
Helix 34	AD7	B	756	768	Right-handed alpha
Helix 35	AD8	B	797	805	Right-handed alpha
Helix 36	AD9	B	810	831	Right-handed alpha
Helix 37	AE1	B	839	841	Right-handed 310
Helix 38	AE2	B	877	881	Right-handed 310
Helix 39	AE3	B	882	889	Right-handed alpha
Helix 40	AE4	B	892	909	Right-handed alpha
Helix 41	AE5	B	919	921	Right-handed 310
Helix 42	AE6	B	922	929	Right-handed alpha
Helix 43	AE7	B	940	951	Right-handed alpha
Helix 44	AE8	B	954	958	Right-handed 310
Helix 45	AE9	B	960	973	Right-handed alpha
Helix 46	AF1	B	974	979	Right-handed alpha
Helix 47	AF2	B	991	1003	Right-handed alpha
Helix 48	AF3	C	708	710	Right-handed 310
Helix 49	AF4	C	755	767	Right-handed alpha
Helix 50	AF5	C	797	805	Right-handed alpha
Helix 51	AF6	C	810	831	Right-handed alpha
Helix 52	AF7	C	839	841	Right-handed 310
Helix 53	AF8	C	857	862	Right-handed alpha
Helix 54	AF9	C	877	881	Right-handed 310
Helix 55	AG1	C	882	889	Right-handed alpha
Helix 56	AG2	C	892	909	Right-handed alpha
Helix 57	AG3	C	919	921	Right-handed 310
Helix 58	AG4	C	922	929	Right-handed alpha
Helix 59	AG5	C	940	951	Right-handed alpha
Helix 60	AG6	C	960	973	Right-handed alpha
Helix 61	AG7	C	974	979	Right-handed alpha
Helix 62	AG8	C	983	987	Right-handed 310
Helix 63	AG9	C	990	1002	Right-handed alpha

There are 8 sheets in PDB entry 8TO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	706	first strand
Strand 2	D	779	782	parallel
Strand 3	D	786	790	anti-parallel
Strand 4	D	740	746	anti-parallel
Strand 5	D	726	731	anti-parallel
Strand 6	D	712	719	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	843	847	first strand
Strand 2	D	850	853	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	779	782	parallel
Strand 3	A	786	790	anti-parallel
Strand 4	A	740	747	anti-parallel
Strand 5	A	724	731	anti-parallel
Strand 6	A	712	719	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	847	first strand
Strand 2	A	850	853	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	779	782	parallel
Strand 3	B	786	791	anti-parallel
Strand 4	B	740	747	anti-parallel
Strand 5	B	724	731	anti-parallel
Strand 6	B	712	720	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	847	first strand
Strand 2	B	850	853	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	707	first strand
Strand 2	C	779	782	parallel
Strand 3	C	786	790	anti-parallel
Strand 4	C	740	747	anti-parallel
Strand 5	C	724	731	anti-parallel
Strand 6	C	712	720	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	843	847	first strand
Strand 2	C	850	853	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TO3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TO3