Analysis of interatomic Contacts of Structural Units in PDB entry:
8TO8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TO8 entry

There are 9 chains in PDB entry 8TO8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	VAL 5	ASP 236
H	SER 4	ASP 233
I	VAL 2	ASP 1341
J	GLU 16	ALA 1375
K	ALA 2	GLU 76
L	SER 7	ASP 612
M	ASP 250	PRO 322
O	C 40	T 82
P	A 33	G 66

There are136 helices in PDB entry 8TO8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	34	50	Right-handed alpha
Helix 2	AA2	G	77	87	Right-handed alpha
Helix 3	AA3	G	154	159	Right-handed alpha
Helix 4	AA4	G	212	233	Right-handed alpha
Helix 5	AA5	H	34	50	Right-handed alpha
Helix 6	AA6	H	80	87	Right-handed alpha
Helix 7	AA7	H	113	115	Right-handed 310
Helix 8	AA8	H	212	228	Right-handed alpha
Helix 9	AA9	I	29	39	Right-handed alpha
Helix 10	AB1	I	48	57	Right-handed alpha
Helix 11	AB2	I	62	64	Right-handed 310
Helix 12	AB3	I	81	89	Right-handed alpha
Helix 13	AB4	I	206	213	Right-handed alpha
Helix 14	AB5	I	216	225	Right-handed alpha
Helix 15	AB6	I	270	281	Right-handed alpha
Helix 16	AB7	I	288	293	Right-handed alpha
Helix 17	AB8	I	318	328	Right-handed alpha
Helix 18	AB9	I	346	354	Right-handed alpha
Helix 19	AC1	I	358	371	Right-handed alpha
Helix 20	AC2	I	377	389	Right-handed alpha
Helix 21	AC3	I	398	409	Right-handed alpha
Helix 22	AC4	I	421	438	Right-handed alpha
Helix 23	AC5	I	455	480	Right-handed alpha
Helix 24	AC6	I	494	508	Right-handed alpha
Helix 25	AC7	I	519	528	Right-handed alpha
Helix 26	AC8	I	539	543	Right-handed 310
Helix 27	AC9	I	551	555	Right-handed 310
Helix 28	AD1	I	608	612	Right-handed alpha
Helix 29	AD2	I	664	668	Right-handed 310
Helix 30	AD3	I	670	674	Right-handed 310
Helix 31	AD4	I	675	687	Right-handed alpha
Helix 32	AD5	I	704	713	Right-handed alpha
Helix 33	AD6	I	738	741	Right-handed 310
Helix 34	AD7	I	820	825	Right-handed alpha
Helix 35	AD8	I	898	907	Right-handed alpha
Helix 36	AD9	I	942	979	Right-handed alpha
Helix 37	AE1	I	993	1000	Right-handed 310
Helix 38	AE2	I	1005	1037	Right-handed alpha
Helix 39	AE3	I	1081	1085	Right-handed 310
Helix 40	AE4	I	1101	1106	Right-handed alpha
Helix 41	AE5	I	1109	1134	Right-handed alpha
Helix 42	AE6	I	1137	1150	Right-handed alpha
Helix 43	AE7	I	1160	1164	Right-handed 310
Helix 44	AE8	I	1165	1176	Right-handed alpha
Helix 45	AE9	I	1191	1202	Right-handed alpha
Helix 46	AF1	I	1238	1242	Right-handed 310
Helix 47	AF2	I	1271	1281	Right-handed alpha
Helix 48	AF3	I	1283	1292	Right-handed alpha
Helix 49	AF4	I	1297	1309	Right-handed alpha
Helix 50	AF5	I	1320	1333	Right-handed alpha
Helix 51	AF6	J	26	33	Right-handed alpha
Helix 52	AF7	J	58	63	Right-handed alpha
Helix 53	AF8	J	94	100	Right-handed 310
Helix 54	AF9	J	114	117	Right-handed 310
Helix 55	AG1	J	122	129	Right-handed alpha
Helix 56	AG2	J	131	140	Right-handed alpha
Helix 57	AG3	J	162	170	Right-handed alpha
Helix 58	AG4	J	181	192	Right-handed alpha
Helix 59	AG5	J	193	207	Right-handed alpha
Helix 60	AG6	J	212	231	Right-handed alpha
Helix 61	AG7	J	233	236	Right-handed 310
Helix 62	AG8	J	246	250	Right-handed 310
Helix 63	AG9	J	263	283	Right-handed alpha
Helix 64	AH1	J	288	308	Right-handed alpha
Helix 65	AH2	J	327	331	Right-handed 310
Helix 66	AH3	J	370	377	Right-handed alpha
Helix 67	AH4	J	377	388	Right-handed alpha
Helix 68	AH5	J	393	404	Right-handed alpha
Helix 69	AH6	J	405	417	Right-handed alpha
Helix 70	AH7	J	430	432	Right-handed 310
Helix 71	AH8	J	450	452	Right-handed 310
Helix 72	AH9	J	453	458	Right-handed alpha
Helix 73	AI1	J	473	483	Right-handed alpha
Helix 74	AI2	J	504	514	Right-handed alpha
Helix 75	AI3	J	529	539	Right-handed alpha
Helix 76	AI4	J	574	580	Right-handed alpha
Helix 77	AI5	J	597	612	Right-handed alpha
Helix 78	AI6	J	614	636	Right-handed alpha
Helix 79	AI7	J	649	670	Right-handed alpha
Helix 80	AI8	J	674	702	Right-handed alpha
Helix 81	AI9	J	720	728	Right-handed alpha
Helix 82	AJ1	J	733	742	Right-handed alpha
Helix 83	AJ2	J	768	804	Right-handed alpha
Helix 84	AJ3	J	834	840	Right-handed alpha
Helix 85	AJ4	J	865	876	Right-handed alpha
Helix 86	AJ5	J	884	888	Right-handed 310
Helix 87	AJ6	J	895	900	Right-handed alpha
Helix 88	AJ7	J	914	925	Right-handed alpha
Helix 89	AJ8	J	926	928	Right-handed 310
Helix 90	AJ9	J	1137	1146	Right-handed alpha
Helix 91	AK1	J	1216	1224	Right-handed alpha
Helix 92	AK2	J	1225	1237	Right-handed alpha
Helix 93	AK3	J	1237	1244	Right-handed alpha
Helix 94	AK4	J	1250	1261	Right-handed alpha
Helix 95	AK5	J	1282	1295	Right-handed alpha
Helix 96	AK6	J	1318	1326	Right-handed alpha
Helix 97	AK7	J	1327	1338	Right-handed alpha
Helix 98	AK8	J	1346	1354	Right-handed alpha
Helix 99	AK9	J	1362	1375	Right-handed alpha
Helix 100	AL1	K	7	14	Right-handed alpha
Helix 101	AL2	K	15	32	Right-handed alpha
Helix 102	AL3	K	45	56	Right-handed alpha
Helix 103	AL4	K	60	76	Right-handed alpha
Helix 104	AL5	L	8	20	Right-handed alpha
Helix 105	AL6	L	23	31	Right-handed alpha
Helix 106	AL7	L	39	49	Right-handed alpha
Helix 107	AL8	L	78	83	Right-handed alpha
Helix 108	AL9	L	96	107	Right-handed alpha
Helix 109	AM1	L	112	135	Right-handed alpha
Helix 110	AM2	L	137	153	Right-handed alpha
Helix 111	AM3	L	157	162	Right-handed alpha
Helix 112	AM4	L	217	233	Right-handed alpha
Helix 113	AM5	L	236	258	Right-handed alpha
Helix 114	AM6	L	262	292	Right-handed alpha
Helix 115	AM7	L	298	307	Right-handed alpha
Helix 116	AM8	L	317	322	Right-handed 310
Helix 117	AM9	L	324	330	Right-handed alpha
Helix 118	AN1	L	333	352	Right-handed alpha
Helix 119	AN2	L	354	391	Right-handed alpha
Helix 120	AN3	L	400	418	Right-handed alpha
Helix 121	AN4	L	426	431	Right-handed alpha
Helix 122	AN5	L	431	446	Right-handed alpha
Helix 123	AN6	L	453	475	Right-handed alpha
Helix 124	AN7	L	479	488	Right-handed alpha
Helix 125	AN8	L	492	499	Right-handed alpha
Helix 126	AN9	L	518	523	Right-handed 310
Helix 127	AO1	L	530	549	Right-handed alpha
Helix 128	AO2	L	552	563	Right-handed alpha
Helix 129	AO3	L	572	581	Right-handed alpha
Helix 130	AO4	L	585	600	Right-handed alpha
Helix 131	AO5	L	605	612	Right-handed alpha
Helix 132	AO6	M	256	261	Right-handed 310
Helix 133	AO7	M	263	274	Right-handed alpha
Helix 134	AO8	M	277	283	Right-handed alpha
Helix 135	AO9	M	285	291	Right-handed alpha
Helix 136	AP1	M	296	310	Right-handed alpha

There are 45 sheets in PDB entry 8TO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	15	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	53	first strand
Strand 2	G	149	153	anti-parallel
Strand 3	G	175	177	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	115	116	first strand
Strand 2	G	97	105	anti-parallel
Strand 3	G	139	147	anti-parallel
Strand 4	G	56	61	anti-parallel
Strand 5	G	171	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	92	first strand
Strand 2	G	121	123	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	129	133	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	20	first strand
Strand 2	H	23	31	anti-parallel
Strand 3	H	204	207	anti-parallel
Strand 4	H	180	184	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	20	first strand
Strand 2	H	23	31	anti-parallel
Strand 3	H	198	201	anti-parallel
Strand 4	H	187	190	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	105	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	53	61	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	111	first strand
Strand 2	H	129	132	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	66	75	anti-parallel
Strand 3	I	93	106	anti-parallel
Strand 4	I	109	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	529	531	parallel
Strand 4	I	572	574	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	159	first strand
Strand 2	I	172	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	198	anti-parallel
Strand 5	I	204	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	226	229	first strand
Strand 2	I	334	337	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	238	239	first strand
Strand 2	I	285	286	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	296	297	first strand
Strand 2	I	315	316	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	301	303	first strand
Strand 2	I	308	311	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	599	607	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	652	654	anti-parallel
Strand 4	I	616	617	parallel
Strand 5	I	633	637	anti-parallel
Strand 6	I	642	646	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	716	717	first strand
Strand 2	I	782	785	anti-parallel
Strand 3	I	768	769	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	748	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	728	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	789	790	first strand
Strand 2	I	793	794	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1209	1210	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	1065	1067	anti-parallel
Strand 4	I	1073	1080	anti-parallel
Strand 5	I	815	819	parallel
Strand 6	I	1096	1098	anti-parallel
Strand 7	I	798	804	parallel
Strand 8	I	1225	1234	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	846	847	first strand
Strand 2	I	830	843	anti-parallel
Strand 3	I	1046	1058	anti-parallel
Strand 4	I	925	935	anti-parallel
Strand 5	I	876	878	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	849	850	first strand
Strand 2	I	886	887	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel
Strand 7	J	447	448	anti-parallel
Strand 8	J	350	356	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1268	1270	first strand
Strand 2	J	345	347	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1338	first strand
Strand 2	J	20	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	37	first strand
Strand 2	J	102	112	parallel
Strand 3	J	238	244	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	161	first strand
Strand 2	J	143	146	anti-parallel
Strand 3	J	178	179	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	252	254	first strand
Strand 2	J	260	262	anti-parallel
Strand 3	L	505	506	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	556	parallel
Strand 3	J	564	573	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	703	706	first strand
Strand 2	J	714	717	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	825	826	first strand
Strand 2	J	831	833	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	950	first strand
Strand 2	J	1018	1019	anti-parallel
Strand 3	J	1002	1003	anti-parallel
Strand 4	J	973	975	anti-parallel
Strand 5	J	965	967	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	957	961	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	991	996	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1034	1038	first strand
Strand 2	J	1077	1081	anti-parallel
Strand 3	J	1087	1088	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1046	1050	first strand
Strand 2	J	1057	1061	anti-parallel
Strand 3	J	1105	1107	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1162	1165	first strand
Strand 2	J	1173	1178	anti-parallel
Strand 3	J	1187	1190	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TO8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TO8