Analysis of interatomic Contacts of Structural Units in PDB entry:
8TO9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TO9 entry

There are 12 chains in PDB entry 8TO9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	LYS 502
B	LEU 34	LYS 502
C	LEU 34	LYS 502
D	GLN 1	SER 113
E	GLN 1	SER 113
F	ASP 1	LYS 107
G	ASP 1	LYS 107
H	GLN 1	SER 113
I	LEU 520	ILE 655
J	LEU 520	ASN 656
L	ASP 1	LYS 107
Z	LEU 520	GLN 653

There are 38 helices in PDB entry 8TO9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	117	Right-handed alpha
Helix 2	AA2	A	334	352	Right-handed alpha
Helix 3	AA3	A	425	429	Right-handed 310
Helix 4	AA4	A	475	481	Right-handed alpha
Helix 5	AA5	B	94	97	Right-handed 310
Helix 6	AA6	B	98	117	Right-handed alpha
Helix 7	AA7	B	334	350	Right-handed alpha
Helix 8	AA8	B	425	429	Right-handed 310
Helix 9	AA9	B	474	481	Right-handed alpha
Helix 10	AB1	B	482	486	Right-handed 310
Helix 11	AB2	C	99	117	Right-handed alpha
Helix 12	AB3	C	334	350	Right-handed alpha
Helix 13	AB4	C	425	429	Right-handed 310
Helix 14	AB5	C	474	481	Right-handed alpha
Helix 15	AB6	C	482	484	Right-handed 310
Helix 16	AB7	D	73	75	Right-handed 310
Helix 17	AB8	E	73	75	Right-handed 310
Helix 18	AB9	G	79	83	Right-handed 310
Helix 19	AC1	H	73	75	Right-handed 310
Helix 20	AC2	I	522	526	Right-handed 310
Helix 21	AC3	I	529	540	Right-handed alpha
Helix 22	AC4	I	566	595	Right-handed alpha
Helix 23	AC5	I	618	622	Right-handed 310
Helix 24	AC6	I	627	635	Right-handed alpha
Helix 25	AC7	I	638	655	Right-handed alpha
Helix 26	AC8	J	522	526	Right-handed 310
Helix 27	AC9	J	529	540	Right-handed alpha
Helix 28	AD1	J	566	596	Right-handed alpha
Helix 29	AD2	J	618	622	Right-handed 310
Helix 30	AD3	J	627	636	Right-handed alpha
Helix 31	AD4	J	638	656	Right-handed alpha
Helix 32	AD5	L	79	83	Right-handed 310
Helix 33	AD6	Z	522	526	Right-handed 310
Helix 34	AD7	Z	529	540	Right-handed alpha
Helix 35	AD8	Z	566	596	Right-handed alpha
Helix 36	AD9	Z	618	622	Right-handed 310
Helix 37	AE1	Z	627	636	Right-handed alpha
Helix 38	AE2	Z	638	653	Right-handed alpha

There are 49 sheets in PDB entry 8TO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	495	499	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	46	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	215	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	238	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	190	193	anti-parallel
Strand 3	A	181	182	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	154	156	anti-parallel
Strand 3	A	176	177	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	172	173	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	201	first strand
Strand 2	A	432	433	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	374	377	anti-parallel
Strand 3	A	382	385	anti-parallel
Strand 4	A	418	419	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	451	455	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	306	first strand
Strand 2	A	318	319	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	415	416	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	499	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	J	603	604	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	83	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	215	218	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	238	239	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	190	193	anti-parallel
Strand 3	B	181	182	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	154	159	anti-parallel
Strand 3	B	172	177	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	201	first strand
Strand 2	B	432	433	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	283	287	anti-parallel
Strand 3	B	451	456	anti-parallel
Strand 4	B	467	469	anti-parallel
Strand 5	B	360	361	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	377	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	418	419	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	495	499	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	Z	603	609	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	85	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	215	218	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	238	239	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	154	159	anti-parallel
Strand 3	C	172	177	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	192	193	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	432	434	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	374	377	anti-parallel
Strand 3	C	382	385	anti-parallel
Strand 4	C	415	419	anti-parallel
Strand 5	C	330	332	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	283	287	anti-parallel
Strand 3	C	451	455	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	306	first strand
Strand 2	C	318	319	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	361	first strand
Strand 2	C	467	468	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	94	97	anti-parallel
Strand 3	D	100	102	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	36	39	anti-parallel
Strand 4	D	89	91	anti-parallel
Strand 5	D	107	108	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	94	97	anti-parallel
Strand 3	E	100	102	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	59	first strand
Strand 2	E	46	51	anti-parallel
Strand 3	E	36	39	anti-parallel
Strand 4	E	88	92	anti-parallel
Strand 5	E	107	109	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	22	first strand
Strand 2	F	70	75	anti-parallel
Strand 3	F	62	67	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	20	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	103	106	parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	45	49	anti-parallel
Strand 3	G	33	38	anti-parallel
Strand 4	G	85	90	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	110	111	parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	35	first strand
Strand 2	H	94	97	anti-parallel
Strand 3	H	100	102	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	36	39	anti-parallel
Strand 4	H	89	91	anti-parallel
Strand 5	H	107	108	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TO9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TO9