Analysis of interatomic Contacts of Structural Units in PDB entry:
8TOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TOF entry

There are 20 chains in PDB entry 8TOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 663	LEU 1319
B	VAL 2	ALA 386
D	GLU 7	GLY 400
E	LEU 10	ASP 376
F	ASP 256	LYS 358
G	GLU 78	LYS 565
H	UNK -1	UNK 3
N	T -89	T 86
T	A -86	A 89
a	VAL 35	VAL 35
a	LYS 37	ALA 135
b	LEU 22	GLY 102
c	THR 16	LYS 118
d	LYS 28	LYS 122
e	VAL 35	VAL 35
e	LYS 37	ALA 135
f	ASN 25	GLY 102
g	ALA 14	LYS 118
h	THR 29	ALA 121
x	UNK -2	UNK 4

There are115 helices in PDB entry 8TOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	664	676	Right-handed alpha
Helix 2	AA2	A	678	692	Right-handed alpha
Helix 3	AA3	A	698	710	Right-handed alpha
Helix 4	AA4	A	713	725	Right-handed alpha
Helix 5	AA5	A	771	778	Right-handed alpha
Helix 6	AA6	A	787	791	Right-handed 310
Helix 7	AA7	A	801	840	Right-handed alpha
Helix 8	AA8	A	842	849	Right-handed alpha
Helix 9	AA9	A	852	857	Right-handed 310
Helix 10	AB1	A	861	871	Right-handed alpha
Helix 11	AB2	A	872	885	Right-handed alpha
Helix 12	AB3	A	890	928	Right-handed alpha
Helix 13	AB4	A	929	934	Right-handed alpha
Helix 14	AB5	A	937	943	Right-handed alpha
Helix 15	AB6	A	944	965	Right-handed alpha
Helix 16	AB7	A	984	999	Right-handed alpha
Helix 17	AB8	A	1003	1022	Right-handed alpha
Helix 18	AB9	A	1026	1039	Right-handed alpha
Helix 19	AC1	A	1141	1173	Right-handed alpha
Helix 20	AC2	A	1179	1184	Right-handed alpha
Helix 21	AC3	A	1189	1194	Right-handed alpha
Helix 22	AC4	A	1205	1216	Right-handed alpha
Helix 23	AC5	A	1220	1230	Right-handed alpha
Helix 24	AC6	A	1236	1240	Right-handed 310
Helix 25	AC7	A	1242	1258	Right-handed alpha
Helix 26	AC8	A	1260	1274	Right-handed alpha
Helix 27	AC9	A	1279	1293	Right-handed alpha
Helix 28	AD1	B	42	55	Right-handed alpha
Helix 29	AD2	B	70	75	Right-handed alpha
Helix 30	AD3	B	79	87	Right-handed alpha
Helix 31	AD4	B	94	96	Right-handed 310
Helix 32	AD5	B	97	105	Right-handed alpha
Helix 33	AD6	B	115	136	Right-handed alpha
Helix 34	AD7	B	164	175	Right-handed alpha
Helix 35	AD8	B	190	197	Right-handed alpha
Helix 36	AD9	B	226	230	Right-handed 310
Helix 37	AE1	B	243	262	Right-handed alpha
Helix 38	AE2	B	272	276	Right-handed 310
Helix 39	AE3	B	287	301	Right-handed alpha
Helix 40	AE4	B	316	330	Right-handed alpha
Helix 41	AE5	B	368	381	Right-handed alpha
Helix 42	AE6	D	68	73	Right-handed alpha
Helix 43	AE7	D	85	89	Right-handed 310
Helix 44	AE8	D	101	131	Right-handed alpha
Helix 45	AE9	D	225	240	Right-handed alpha
Helix 46	AF1	D	253	266	Right-handed alpha
Helix 47	AF2	D	270	297	Right-handed alpha
Helix 48	AF3	D	301	317	Right-handed alpha
Helix 49	AF4	D	321	325	Right-handed 310
Helix 50	AF5	D	327	344	Right-handed alpha
Helix 51	AF6	D	348	369	Right-handed alpha
Helix 52	AF7	D	391	399	Right-handed alpha
Helix 53	AF8	E	68	73	Right-handed alpha
Helix 54	AF9	E	85	89	Right-handed 310
Helix 55	AG1	E	101	131	Right-handed alpha
Helix 56	AG2	E	225	241	Right-handed alpha
Helix 57	AG3	E	253	266	Right-handed alpha
Helix 58	AG4	E	271	297	Right-handed alpha
Helix 59	AG5	E	301	317	Right-handed alpha
Helix 60	AG6	E	321	325	Right-handed 310
Helix 61	AG7	E	327	344	Right-handed alpha
Helix 62	AG8	E	348	369	Right-handed alpha
Helix 63	AG9	E	369	375	Right-handed alpha
Helix 64	AH1	F	303	313	Right-handed alpha
Helix 65	AH2	F	315	330	Right-handed alpha
Helix 66	AH3	F	333	335	Right-handed 310
Helix 67	AH4	F	336	346	Right-handed alpha
Helix 68	AH5	G	120	128	Right-handed alpha
Helix 69	AH6	G	163	167	Right-handed 310
Helix 70	AH7	G	292	296	Right-handed 310
Helix 71	AH8	G	303	313	Right-handed alpha
Helix 72	AH9	G	315	330	Right-handed alpha
Helix 73	AI1	G	331	335	Right-handed 310
Helix 74	AI2	G	336	344	Right-handed alpha
Helix 75	AI3	G	354	359	Right-handed alpha
Helix 76	AI4	G	382	387	Right-handed alpha
Helix 77	AI5	G	393	397	Right-handed 310
Helix 78	AI6	G	430	434	Right-handed 310
Helix 79	AI7	G	544	565	Right-handed alpha
Helix 80	AI8	a	44	57	Right-handed alpha
Helix 81	AI9	a	63	76	Right-handed alpha
Helix 82	AJ1	a	85	114	Right-handed alpha
Helix 83	AJ2	a	120	132	Right-handed alpha
Helix 84	AJ3	b	25	29	Right-handed 310
Helix 85	AJ4	b	30	41	Right-handed alpha
Helix 86	AJ5	b	49	76	Right-handed alpha
Helix 87	AJ6	b	82	94	Right-handed alpha
Helix 88	AJ7	c	17	21	Right-handed alpha
Helix 89	AJ8	c	26	37	Right-handed alpha
Helix 90	AJ9	c	45	73	Right-handed alpha
Helix 91	AK1	c	79	90	Right-handed alpha
Helix 92	AK2	c	90	97	Right-handed alpha
Helix 93	AK3	c	112	116	Right-handed 310
Helix 94	AK4	d	34	46	Right-handed alpha
Helix 95	AK5	d	52	81	Right-handed alpha
Helix 96	AK6	d	87	99	Right-handed alpha
Helix 97	AK7	d	100	121	Right-handed alpha
Helix 98	AK8	e	44	57	Right-handed alpha
Helix 99	AK9	e	63	79	Right-handed alpha
Helix 100	AL1	e	85	114	Right-handed alpha
Helix 101	AL2	e	120	132	Right-handed alpha
Helix 102	AL3	f	25	29	Right-handed 310
Helix 103	AL4	f	30	41	Right-handed alpha
Helix 104	AL5	f	49	76	Right-handed alpha
Helix 105	AL6	f	82	93	Right-handed alpha
Helix 106	AL7	g	16	22	Right-handed alpha
Helix 107	AL8	g	26	36	Right-handed alpha
Helix 108	AL9	g	45	73	Right-handed alpha
Helix 109	AM1	g	79	90	Right-handed alpha
Helix 110	AM2	g	90	97	Right-handed alpha
Helix 111	AM3	g	112	116	Right-handed 310
Helix 112	AM4	h	34	46	Right-handed alpha
Helix 113	AM5	h	52	81	Right-handed alpha
Helix 114	AM6	h	87	99	Right-handed alpha
Helix 115	AM7	h	100	121	Right-handed alpha

There are 21 sheets in PDB entry 8TOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	757	first strand
Strand 2	A	782	783	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	978	first strand
Strand 2	A	1311	1313	anti-parallel
Strand 3	A	1304	1306	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	237	first strand
Strand 2	B	203	209	parallel
Strand 3	B	180	184	parallel
Strand 4	B	267	270	parallel
Strand 5	B	305	308	parallel
Strand 6	B	141	144	parallel
Strand 7	B	21	24	parallel
Strand 8	B	62	66	parallel
Strand 9	G	176	179	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	21	32	anti-parallel
Strand 3	D	77	81	anti-parallel
Strand 4	D	90	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	39	first strand
Strand 2	D	21	32	anti-parallel
Strand 3	D	13	18	anti-parallel
Strand 4	D	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	387	389	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	21	32	anti-parallel
Strand 3	E	77	81	anti-parallel
Strand 4	E	90	92	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	21	32	anti-parallel
Strand 3	E	13	18	anti-parallel
Strand 4	E	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	272	274	first strand
Strand 2	F	281	283	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	437	439	first strand
Strand 2	G	446	448	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	476	477	first strand
Strand 2	G	489	490	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	83	84	first strand
Strand 2	b	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	118	119	first strand
Strand 2	b	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	96	98	first strand
Strand 2	g	100	102	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	42	43	first strand
Strand 2	d	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	77	78	first strand
Strand 2	d	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	100	102	first strand
Strand 2	f	96	98	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	83	84	first strand
Strand 2	f	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	118	119	first strand
Strand 2	f	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	42	43	first strand
Strand 2	h	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	77	78	first strand
Strand 2	h	50	51	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TOF