Analysis of interatomic Contacts of Structural Units in PDB entry:
8TOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TOI entry

There are 2 chains in PDB entry 8TOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 15ALA 718
B
 GLU 15ALA 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 8TOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 47Right-handed alpha
Helix 2
AA2
A
72 90Right-handed alpha
Helix 3
AA3
A
102 107Right-handed 310
Helix 4
AA4
A
111 125Right-handed alpha
Helix 5
AA5
A
126 130Right-handed 310
Helix 6
AA6
A
152 165Right-handed alpha
Helix 7
AA7
A
170 182Right-handed alpha
Helix 8
AA8
A
182 199Right-handed alpha
Helix 9
AA9
A
199 212Right-handed alpha
Helix 10
AB1
A
217 246Right-handed alpha
Helix 11
AB2
A
250 254Right-handed 310
Helix 12
AB3
A
280 289Right-handed alpha
Helix 13
AB4
A
290 320Right-handed alpha
Helix 14
AB5
A
330 358Right-handed alpha
Helix 15
AB6
A
362 392Right-handed alpha
Helix 16
AB7
A
400 413Right-handed alpha
Helix 17
AB8
A
431 453Right-handed alpha
Helix 18
AB9
A
453 466Right-handed alpha
Helix 19
AC1
A
477 481Right-handed 310
Helix 20
AC2
A
482 493Right-handed alpha
Helix 21
AC3
A
499 518Right-handed alpha
Helix 22
AC4
A
523 545Right-handed alpha
Helix 23
AC5
A
560 585Right-handed alpha
Helix 24
AC6
A
598 625Right-handed alpha
Helix 25
AC7
A
629 642Right-handed alpha
Helix 26
AC8
A
667 685Right-handed alpha
Helix 27
AC9
A
689 694Right-handed alpha
Helix 28
AD1
A
701 716Right-handed alpha
Helix 29
AD2
B
32 47Right-handed alpha
Helix 30
AD3
B
72 90Right-handed alpha
Helix 31
AD4
B
102 107Right-handed 310
Helix 32
AD5
B
111 125Right-handed alpha
Helix 33
AD6
B
126 130Right-handed 310
Helix 34
AD7
B
152 165Right-handed alpha
Helix 35
AD8
B
170 182Right-handed alpha
Helix 36
AD9
B
182 199Right-handed alpha
Helix 37
AE1
B
199 212Right-handed alpha
Helix 38
AE2
B
217 246Right-handed alpha
Helix 39
AE3
B
250 254Right-handed 310
Helix 40
AE4
B
280 289Right-handed alpha
Helix 41
AE5
B
290 320Right-handed alpha
Helix 42
AE6
B
330 358Right-handed alpha
Helix 43
AE7
B
362 392Right-handed alpha
Helix 44
AE8
B
400 413Right-handed alpha
Helix 45
AE9
B
431 453Right-handed alpha
Helix 46
AF1
B
453 466Right-handed alpha
Helix 47
AF2
B
477 481Right-handed 310
Helix 48
AF3
B
482 493Right-handed alpha
Helix 49
AF4
B
499 518Right-handed alpha
Helix 50
AF5
B
523 545Right-handed alpha
Helix 51
AF6
B
560 585Right-handed alpha
Helix 52
AF7
B
598 625Right-handed alpha
Helix 53
AF8
B
629 642Right-handed alpha
Helix 54
AF9
B
667 685Right-handed alpha
Helix 55
AG1
B
689 694Right-handed alpha
Helix 56
AG2
B
701 716Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8TOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
275 278anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
66 70anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
275 278anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il