Analysis of interatomic Contacts of Structural Units in PDB entry:
8TOM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TOM entry

There are 9 chains in PDB entry 8TOM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	SER 4	LEU 234
H	SER 4	LEU 234
I	VAL 2	ASP 1341
J	GLU 16	ALA 1375
K	ARG 3	GLU 76
L	SER 7	ASP 613
M	ASP 250	PRO 322
O	A 16	G 55
P	C 31	T 70

There are135 helices in PDB entry 8TOM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	34	48	Right-handed alpha
Helix 2	AA2	G	77	86	Right-handed alpha
Helix 3	AA3	G	111	115	Right-handed 310
Helix 4	AA4	G	155	161	Right-handed 310
Helix 5	AA5	G	212	234	Right-handed alpha
Helix 6	AA6	H	34	50	Right-handed alpha
Helix 7	AA7	H	77	87	Right-handed alpha
Helix 8	AA8	H	113	115	Right-handed 310
Helix 9	AA9	H	212	228	Right-handed alpha
Helix 10	AB1	I	4	8	Right-handed 310
Helix 11	AB2	I	28	36	Right-handed alpha
Helix 12	AB3	I	49	57	Right-handed alpha
Helix 13	AB4	I	81	89	Right-handed alpha
Helix 14	AB5	I	206	213	Right-handed alpha
Helix 15	AB6	I	216	224	Right-handed alpha
Helix 16	AB7	I	242	247	Right-handed alpha
Helix 17	AB8	I	270	280	Right-handed alpha
Helix 18	AB9	I	318	327	Right-handed alpha
Helix 19	AC1	I	346	354	Right-handed alpha
Helix 20	AC2	I	358	371	Right-handed alpha
Helix 21	AC3	I	379	390	Right-handed alpha
Helix 22	AC4	I	397	409	Right-handed alpha
Helix 23	AC5	I	421	438	Right-handed alpha
Helix 24	AC6	I	455	480	Right-handed alpha
Helix 25	AC7	I	495	508	Right-handed alpha
Helix 26	AC8	I	519	525	Right-handed alpha
Helix 27	AC9	I	610	614	Right-handed 310
Helix 28	AD1	I	670	674	Right-handed 310
Helix 29	AD2	I	675	686	Right-handed alpha
Helix 30	AD3	I	687	689	Right-handed 310
Helix 31	AD4	I	704	712	Right-handed alpha
Helix 32	AD5	I	820	825	Right-handed alpha
Helix 33	AD6	I	858	863	Right-handed 310
Helix 34	AD7	I	898	907	Right-handed alpha
Helix 35	AD8	I	944	981	Right-handed alpha
Helix 36	AD9	I	1005	1037	Right-handed alpha
Helix 37	AE1	I	1081	1085	Right-handed 310
Helix 38	AE2	I	1101	1106	Right-handed alpha
Helix 39	AE3	I	1109	1134	Right-handed alpha
Helix 40	AE4	I	1137	1151	Right-handed alpha
Helix 41	AE5	I	1171	1176	Right-handed alpha
Helix 42	AE6	I	1191	1202	Right-handed alpha
Helix 43	AE7	I	1238	1242	Right-handed 310
Helix 44	AE8	I	1272	1281	Right-handed alpha
Helix 45	AE9	I	1283	1292	Right-handed alpha
Helix 46	AF1	I	1299	1309	Right-handed alpha
Helix 47	AF2	I	1320	1332	Right-handed alpha
Helix 48	AF3	J	26	34	Right-handed alpha
Helix 49	AF4	J	58	63	Right-handed alpha
Helix 50	AF5	J	94	100	Right-handed 310
Helix 51	AF6	J	114	117	Right-handed 310
Helix 52	AF7	J	122	129	Right-handed alpha
Helix 53	AF8	J	131	140	Right-handed alpha
Helix 54	AF9	J	161	172	Right-handed alpha
Helix 55	AG1	J	181	192	Right-handed alpha
Helix 56	AG2	J	193	208	Right-handed alpha
Helix 57	AG3	J	210	231	Right-handed alpha
Helix 58	AG4	J	233	236	Right-handed 310
Helix 59	AG5	J	246	250	Right-handed 310
Helix 60	AG6	J	255	259	Right-handed 310
Helix 61	AG7	J	263	286	Right-handed alpha
Helix 62	AG8	J	288	308	Right-handed alpha
Helix 63	AG9	J	326	332	Right-handed alpha
Helix 64	AH1	J	339	343	Right-handed 310
Helix 65	AH2	J	370	377	Right-handed alpha
Helix 66	AH3	J	377	389	Right-handed alpha
Helix 67	AH4	J	393	404	Right-handed alpha
Helix 68	AH5	J	405	417	Right-handed alpha
Helix 69	AH6	J	430	432	Right-handed 310
Helix 70	AH7	J	453	458	Right-handed alpha
Helix 71	AH8	J	473	483	Right-handed alpha
Helix 72	AH9	J	504	514	Right-handed alpha
Helix 73	AI1	J	529	540	Right-handed alpha
Helix 74	AI2	J	574	580	Right-handed alpha
Helix 75	AI3	J	588	593	Right-handed 310
Helix 76	AI4	J	597	612	Right-handed alpha
Helix 77	AI5	J	614	636	Right-handed alpha
Helix 78	AI6	J	649	670	Right-handed alpha
Helix 79	AI7	J	674	703	Right-handed alpha
Helix 80	AI8	J	720	728	Right-handed alpha
Helix 81	AI9	J	733	741	Right-handed alpha
Helix 82	AJ1	J	768	804	Right-handed alpha
Helix 83	AJ2	J	834	840	Right-handed alpha
Helix 84	AJ3	J	865	874	Right-handed alpha
Helix 85	AJ4	J	884	888	Right-handed 310
Helix 86	AJ5	J	896	900	Right-handed alpha
Helix 87	AJ6	J	914	925	Right-handed alpha
Helix 88	AJ7	J	926	929	Right-handed 310
Helix 89	AJ8	J	1137	1147	Right-handed alpha
Helix 90	AJ9	J	1216	1224	Right-handed alpha
Helix 91	AK1	J	1225	1244	Right-handed alpha
Helix 92	AK2	J	1249	1259	Right-handed alpha
Helix 93	AK3	J	1282	1296	Right-handed alpha
Helix 94	AK4	J	1318	1326	Right-handed alpha
Helix 95	AK5	J	1327	1339	Right-handed alpha
Helix 96	AK6	J	1347	1354	Right-handed alpha
Helix 97	AK7	J	1361	1375	Right-handed alpha
Helix 98	AK8	K	7	14	Right-handed alpha
Helix 99	AK9	K	15	32	Right-handed alpha
Helix 100	AL1	K	45	57	Right-handed alpha
Helix 101	AL2	K	60	76	Right-handed alpha
Helix 102	AL3	L	8	20	Right-handed alpha
Helix 103	AL4	L	25	30	Right-handed alpha
Helix 104	AL5	L	37	52	Right-handed alpha
Helix 105	AL6	L	75	88	Right-handed alpha
Helix 106	AL7	L	96	108	Right-handed alpha
Helix 107	AL8	L	114	125	Right-handed alpha
Helix 108	AL9	L	128	136	Right-handed alpha
Helix 109	AM1	L	137	152	Right-handed alpha
Helix 110	AM2	L	157	161	Right-handed 310
Helix 111	AM3	L	214	233	Right-handed alpha
Helix 112	AM4	L	244	257	Right-handed alpha
Helix 113	AM5	L	262	289	Right-handed alpha
Helix 114	AM6	L	298	305	Right-handed alpha
Helix 115	AM7	L	305	310	Right-handed alpha
Helix 116	AM8	L	319	323	Right-handed 310
Helix 117	AM9	L	326	330	Right-handed 310
Helix 118	AN1	L	333	352	Right-handed alpha
Helix 119	AN2	L	354	392	Right-handed alpha
Helix 120	AN3	L	400	418	Right-handed alpha
Helix 121	AN4	L	426	446	Right-handed alpha
Helix 122	AN5	L	453	475	Right-handed alpha
Helix 123	AN6	L	479	487	Right-handed alpha
Helix 124	AN7	L	490	502	Right-handed alpha
Helix 125	AN8	L	518	523	Right-handed 310
Helix 126	AN9	L	530	550	Right-handed alpha
Helix 127	AO1	L	552	564	Right-handed alpha
Helix 128	AO2	L	572	580	Right-handed alpha
Helix 129	AO3	L	583	600	Right-handed alpha
Helix 130	AO4	L	605	612	Right-handed alpha
Helix 131	AO5	M	256	261	Right-handed 310
Helix 132	AO6	M	263	274	Right-handed alpha
Helix 133	AO7	M	278	283	Right-handed alpha
Helix 134	AO8	M	285	291	Right-handed alpha
Helix 135	AO9	M	296	310	Right-handed alpha

There are 45 sheets in PDB entry 8TOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	18	first strand
Strand 2	G	23	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	58	first strand
Strand 2	G	139	149	anti-parallel
Strand 3	G	97	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	110	first strand
Strand 2	G	131	133	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	153	first strand
Strand 2	G	175	177	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	24	first strand
Strand 2	H	205	207	anti-parallel
Strand 3	H	180	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	61	first strand
Strand 2	H	142	149	anti-parallel
Strand 3	H	97	101	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	109	111	first strand
Strand 2	H	129	132	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	187	188	first strand
Strand 2	H	200	201	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	59	first strand
Strand 2	I	67	75	anti-parallel
Strand 3	I	93	103	anti-parallel
Strand 4	I	120	128	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	142	145	anti-parallel
Strand 3	I	512	514	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	454	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	529	531	parallel
Strand 4	I	572	574	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	173	177	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	195	196	first strand
Strand 2	I	204	205	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	599	607	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	652	654	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	616	617	first strand
Strand 2	I	634	638	anti-parallel
Strand 3	I	641	645	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	749	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	728	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	768	769	first strand
Strand 2	I	784	785	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	798	804	first strand
Strand 2	I	1096	1098	parallel
Strand 3	I	816	819	anti-parallel
Strand 4	I	1073	1080	parallel
Strand 5	I	1065	1067	anti-parallel
Strand 6	I	1226	1234	anti-parallel
Strand 7	I	798	804	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	846	847	first strand
Strand 2	I	830	843	anti-parallel
Strand 3	I	1046	1058	anti-parallel
Strand 4	I	926	935	anti-parallel
Strand 5	I	876	877	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	887	889	first strand
Strand 2	I	913	915	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1087	1088	first strand
Strand 2	I	1212	1213	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	424	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	447	448	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1268	1269	first strand
Strand 2	J	346	347	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1340	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	1341	1342	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	112	first strand
Strand 2	J	238	244	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	160	first strand
Strand 2	J	144	148	anti-parallel
Strand 3	J	177	179	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	261	262	first strand
Strand 2	L	505	506	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	547	556	first strand
Strand 2	J	564	573	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	706	707	first strand
Strand 2	J	714	715	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	809	811	first strand
Strand 2	J	894	895	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	825	826	first strand
Strand 2	J	831	833	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	949	951	first strand
Strand 2	J	1016	1019	anti-parallel
Strand 3	J	1002	1003	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	957	961	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	991	996	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	965	966	first strand
Strand 2	J	974	975	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1034	1038	first strand
Strand 2	J	1077	1081	anti-parallel
Strand 3	J	1098	1100	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1047	1051	first strand
Strand 2	J	1056	1060	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1106	1107	first strand
Strand 2	J	1122	1123	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1175	1178	first strand
Strand 2	J	1161	1165	anti-parallel
Strand 3	J	1203	1204	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TOM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TOM