Analysis of interatomic Contacts of Structural Units in PDB entry:
8TOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TOT entry

There are 4 chains in PDB entry 8TOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ALA 614
B
 SER 19ALA 614
C
 TYR 1CYS 13
D
 TYR 1CYS 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8TOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
103 108Right-handed 310
Helix 5
AA5
A
109 130Right-handed alpha
Helix 6
AA6
A
146 155Right-handed alpha
Helix 7
AA7
A
157 172Right-handed alpha
Helix 8
AA8
A
172 194Right-handed alpha
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
218 252Right-handed alpha
Helix 12
AB3
A
275 277Right-handed 310
Helix 13
AB4
A
278 283Right-handed alpha
Helix 14
AB5
A
293 300Right-handed alpha
Helix 15
AB6
A
303 318Right-handed alpha
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
365 385Right-handed alpha
Helix 18
AB9
A
389 393Right-handed 310
Helix 19
AC1
A
397 414Right-handed alpha
Helix 20
AC2
A
414 421Right-handed alpha
Helix 21
AC3
A
431 466Right-handed alpha
Helix 22
AC4
A
469 471Right-handed 310
Helix 23
AC5
A
472 484Right-handed alpha
Helix 24
AC6
A
499 502Right-handed 310
Helix 25
AC7
A
503 508Right-handed alpha
Helix 26
AC8
A
513 533Right-handed alpha
Helix 27
AC9
A
538 542Right-handed 310
Helix 28
AD1
A
547 559Right-handed alpha
Helix 29
AD2
A
565 575Right-handed alpha
Helix 30
AD3
A
581 599Right-handed alpha
Helix 31
AD4
B
20 53Right-handed alpha
Helix 32
AD5
B
55 81Right-handed alpha
Helix 33
AD6
B
84 88Right-handed 310
Helix 34
AD7
B
90 101Right-handed alpha
Helix 35
AD8
B
104 108Right-handed 310
Helix 36
AD9
B
109 130Right-handed alpha
Helix 37
AE1
B
146 155Right-handed alpha
Helix 38
AE2
B
157 172Right-handed alpha
Helix 39
AE3
B
172 194Right-handed alpha
Helix 40
AE4
B
198 205Right-handed alpha
Helix 41
AE5
B
206 208Right-handed 310
Helix 42
AE6
B
218 250Right-handed alpha
Helix 43
AE7
B
265 267Right-handed 310
Helix 44
AE8
B
275 277Right-handed 310
Helix 45
AE9
B
278 283Right-handed alpha
Helix 46
AF1
B
293 300Right-handed alpha
Helix 47
AF2
B
303 318Right-handed alpha
Helix 48
AF3
B
324 331Right-handed alpha
Helix 49
AF4
B
365 385Right-handed alpha
Helix 50
AF5
B
389 393Right-handed 310
Helix 51
AF6
B
397 414Right-handed alpha
Helix 52
AF7
B
414 421Right-handed alpha
Helix 53
AF8
B
431 447Right-handed alpha
Helix 54
AF9
B
448 466Right-handed alpha
Helix 55
AG1
B
469 471Right-handed 310
Helix 56
AG2
B
472 484Right-handed alpha
Helix 57
AG3
B
498 502Right-handed 310
Helix 58
AG4
B
503 508Right-handed alpha
Helix 59
AG5
B
513 533Right-handed alpha
Helix 60
AG6
B
538 542Right-handed 310
Helix 61
AG7
B
547 559Right-handed alpha
Helix 62
AG8
B
565 575Right-handed alpha
Helix 63
AG9
B
581 599Right-handed alpha
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There are 8 sheets in PDB entry 8TOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
141 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
141 143anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 352first strand
Strand 2
B
355 359anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 2first strand
Strand 2
C
10 11anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1 2first strand
Strand 2
D
10 11anti-parallel
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