Analysis of interatomic Contacts of Structural Units in PDB entry:
8TP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TP8 entry

There are 8 chains in PDB entry 8TP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 327
B	GLU 4	TRP 327
U	A 1	T 21
R	A 1	T 21
L	G 18	C 20
Y	G 18	C 20
C	GLU 4	TRP 327
D	HIS 0	PRO 224

There are 49 helices in PDB entry 8TP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	18	Right-handed alpha
Helix 2	AA2	A	24	33	Right-handed alpha
Helix 3	AA3	A	35	50	Right-handed alpha
Helix 4	AA4	A	78	96	Right-handed alpha
Helix 5	AA5	A	97	114	Right-handed alpha
Helix 6	AA6	A	116	133	Right-handed alpha
Helix 7	AA7	A	147	161	Right-handed alpha
Helix 8	AA8	A	228	235	Right-handed alpha
Helix 9	AA9	A	255	260	Right-handed alpha
Helix 10	AB1	A	286	296	Right-handed alpha
Helix 11	AB2	A	297	299	Right-handed 310
Helix 12	AB3	A	306	324	Right-handed alpha
Helix 13	AB4	B	7	19	Right-handed alpha
Helix 14	AB5	B	24	31	Right-handed alpha
Helix 15	AB6	B	35	50	Right-handed alpha
Helix 16	AB7	B	78	96	Right-handed alpha
Helix 17	AB8	B	97	113	Right-handed alpha
Helix 18	AB9	B	116	133	Right-handed alpha
Helix 19	AC1	B	147	160	Right-handed alpha
Helix 20	AC2	B	228	235	Right-handed alpha
Helix 21	AC3	B	255	261	Right-handed alpha
Helix 22	AC4	B	286	296	Right-handed alpha
Helix 23	AC5	B	297	299	Right-handed 310
Helix 24	AC6	B	306	325	Right-handed alpha
Helix 25	AC7	C	7	19	Right-handed alpha
Helix 26	AC8	C	24	33	Right-handed alpha
Helix 27	AC9	C	35	50	Right-handed alpha
Helix 28	AD1	C	71	76	Right-handed alpha
Helix 29	AD2	C	78	96	Right-handed alpha
Helix 30	AD3	C	97	115	Right-handed alpha
Helix 31	AD4	C	116	132	Right-handed alpha
Helix 32	AD5	C	147	161	Right-handed alpha
Helix 33	AD6	C	228	234	Right-handed alpha
Helix 34	AD7	C	255	261	Right-handed alpha
Helix 35	AD8	C	286	296	Right-handed alpha
Helix 36	AD9	C	297	299	Right-handed 310
Helix 37	AE1	C	306	324	Right-handed alpha
Helix 38	AE2	D	4	19	Right-handed alpha
Helix 39	AE3	D	25	33	Right-handed alpha
Helix 40	AE4	D	35	50	Right-handed alpha
Helix 41	AE5	D	78	96	Right-handed alpha
Helix 42	AE6	D	97	114	Right-handed alpha
Helix 43	AE7	D	116	133	Right-handed alpha
Helix 44	AE8	D	147	161	Right-handed alpha
Helix 45	AE9	D	228	235	Right-handed alpha
Helix 46	AF1	D	255	260	Right-handed alpha
Helix 47	AF2	D	286	296	Right-handed alpha
Helix 48	AF3	D	297	299	Right-handed 310
Helix 49	AF4	D	306	324	Right-handed alpha

There are 20 sheets in PDB entry 8TP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	58	first strand
Strand 2	A	61	65	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	B	177	187	parallel
Strand 3	B	192	196	anti-parallel
Strand 4	B	204	207	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	B	177	187	parallel
Strand 3	B	162	168	anti-parallel
Strand 4	B	211	220	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	B	262	263	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	207	first strand
Strand 2	A	191	197	anti-parallel
Strand 3	A	176	187	anti-parallel
Strand 4	A	162	168	anti-parallel
Strand 5	A	211	220	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	207	first strand
Strand 2	A	191	197	anti-parallel
Strand 3	A	176	187	anti-parallel
Strand 4	B	134	136	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	272	first strand
Strand 2	A	278	284	anti-parallel
Strand 3	A	245	251	anti-parallel
Strand 4	A	301	305	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	B	141	142	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	58	first strand
Strand 2	B	61	65	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	272	first strand
Strand 2	B	278	284	anti-parallel
Strand 3	B	245	251	anti-parallel
Strand 4	B	301	305	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	61	65	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	D	177	187	parallel
Strand 3	D	191	196	anti-parallel
Strand 4	D	204	207	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	D	177	187	parallel
Strand 3	D	162	168	anti-parallel
Strand 4	D	211	220	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	D	262	263	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	177	180	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	207	first strand
Strand 2	C	192	195	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	D	135	136	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	272	first strand
Strand 2	C	278	284	anti-parallel
Strand 3	C	245	251	anti-parallel
Strand 4	C	301	305	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	D	141	142	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	D	61	65	anti-parallel
Strand 3	D	54	58	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	272	first strand
Strand 2	D	278	284	anti-parallel
Strand 3	D	245	251	anti-parallel
Strand 4	D	301	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TP8