Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TPJ entry

There are 26 chains in PDB entry 8TPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 687	GLY 896
B	ALA 17	ARG 317
b	ALA 183	LEU 312
C	MET 1	ALA 67
D	SER 2	SER 161
E	MET 1	GLY 70
E	MET 72	SER 161
F	SER 2	SER 161
G	MET 1	GLY 70
G	MET 72	SER 161
H	SER 2	SER 161
I	MET 1	GLY 70
I	MET 72	SER 161
J	SER 2	SER 161
K	MET 1	GLY 70
K	MET 72	SER 161
L	SER 2	SER 161
M	MET 1	GLY 70
M	MET 72	SER 161
N	SER 2	SER 161
O	MET 1	GLY 70
O	MET 72	SER 161
P	LYS 209	ARG 249
Q	LYS 208	ARG 249
R	ARG 201	ILE 204
S	ASN 198	GLU 207

There are144 helices in PDB entry 8TPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	689	694	Right-handed alpha
Helix 2	AA2	A	702	711	Right-handed alpha
Helix 3	AA3	A	715	719	Right-handed 310
Helix 4	AA4	A	731	748	Right-handed alpha
Helix 5	AA5	A	751	755	Right-handed 310
Helix 6	AA6	A	760	769	Right-handed alpha
Helix 7	AA7	A	773	783	Right-handed alpha
Helix 8	AA8	A	784	792	Right-handed alpha
Helix 9	AA9	A	796	810	Right-handed alpha
Helix 10	AB1	A	815	829	Right-handed alpha
Helix 11	AB2	A	830	841	Right-handed alpha
Helix 12	AB3	A	841	848	Right-handed alpha
Helix 13	AB4	A	864	874	Right-handed alpha
Helix 14	AB5	B	19	31	Right-handed alpha
Helix 15	AB6	B	32	47	Right-handed alpha
Helix 16	AB7	B	55	59	Right-handed 310
Helix 17	AB8	B	60	63	Right-handed 310
Helix 18	AB9	B	64	74	Right-handed alpha
Helix 19	AC1	B	75	89	Right-handed alpha
Helix 20	AC2	B	92	100	Right-handed alpha
Helix 21	AC3	B	102	119	Right-handed alpha
Helix 22	AC4	B	132	145	Right-handed alpha
Helix 23	AC5	B	146	160	Right-handed alpha
Helix 24	AC6	B	195	207	Right-handed alpha
Helix 25	AC7	B	209	214	Right-handed alpha
Helix 26	AC8	B	233	245	Right-handed alpha
Helix 27	AC9	b	195	208	Right-handed alpha
Helix 28	AD1	b	209	215	Right-handed alpha
Helix 29	AD2	b	233	245	Right-handed alpha
Helix 30	AD3	b	261	263	Right-handed 310
Helix 31	AD4	C	21	24	Right-handed 310
Helix 32	AD5	C	35	46	Right-handed alpha
Helix 33	AD6	D	3	14	Right-handed alpha
Helix 34	AD7	D	19	32	Right-handed alpha
Helix 35	AD8	D	32	46	Right-handed alpha
Helix 36	AD9	D	46	62	Right-handed alpha
Helix 37	AE1	D	63	67	Right-handed 310
Helix 38	AE2	D	74	99	Right-handed alpha
Helix 39	AE3	D	101	109	Right-handed alpha
Helix 40	AE4	D	111	120	Right-handed alpha
Helix 41	AE5	D	122	139	Right-handed alpha
Helix 42	AE6	D	142	160	Right-handed alpha
Helix 43	AE7	E	3	14	Right-handed alpha
Helix 44	AE8	E	20	60	Right-handed alpha
Helix 45	AE9	E	74	99	Right-handed alpha
Helix 46	AF1	E	101	108	Right-handed alpha
Helix 47	AF2	E	111	120	Right-handed alpha
Helix 48	AF3	E	122	142	Right-handed alpha
Helix 49	AF4	E	142	161	Right-handed alpha
Helix 50	AF5	F	3	13	Right-handed alpha
Helix 51	AF6	F	21	32	Right-handed alpha
Helix 52	AF7	F	32	46	Right-handed alpha
Helix 53	AF8	F	46	62	Right-handed alpha
Helix 54	AF9	F	63	67	Right-handed 310
Helix 55	AG1	F	74	99	Right-handed alpha
Helix 56	AG2	F	101	109	Right-handed alpha
Helix 57	AG3	F	111	120	Right-handed alpha
Helix 58	AG4	F	122	140	Right-handed alpha
Helix 59	AG5	F	142	159	Right-handed alpha
Helix 60	AG6	G	3	14	Right-handed alpha
Helix 61	AG7	G	20	60	Right-handed alpha
Helix 62	AG8	G	74	99	Right-handed alpha
Helix 63	AG9	G	101	108	Right-handed alpha
Helix 64	AH1	G	111	120	Right-handed alpha
Helix 65	AH2	G	122	142	Right-handed alpha
Helix 66	AH3	G	143	161	Right-handed alpha
Helix 67	AH4	H	3	14	Right-handed alpha
Helix 68	AH5	H	19	32	Right-handed alpha
Helix 69	AH6	H	32	46	Right-handed alpha
Helix 70	AH7	H	46	62	Right-handed alpha
Helix 71	AH8	H	73	99	Right-handed alpha
Helix 72	AH9	H	101	109	Right-handed alpha
Helix 73	AI1	H	111	120	Right-handed alpha
Helix 74	AI2	H	122	139	Right-handed alpha
Helix 75	AI3	H	142	160	Right-handed alpha
Helix 76	AI4	I	3	15	Right-handed alpha
Helix 77	AI5	I	20	33	Right-handed alpha
Helix 78	AI6	I	33	60	Right-handed alpha
Helix 79	AI7	I	74	99	Right-handed alpha
Helix 80	AI8	I	101	108	Right-handed alpha
Helix 81	AI9	I	111	120	Right-handed alpha
Helix 82	AJ1	I	122	142	Right-handed alpha
Helix 83	AJ2	I	143	160	Right-handed alpha
Helix 84	AJ3	J	3	13	Right-handed alpha
Helix 85	AJ4	J	19	32	Right-handed alpha
Helix 86	AJ5	J	32	46	Right-handed alpha
Helix 87	AJ6	J	46	62	Right-handed alpha
Helix 88	AJ7	J	63	67	Right-handed 310
Helix 89	AJ8	J	74	99	Right-handed alpha
Helix 90	AJ9	J	101	109	Right-handed alpha
Helix 91	AK1	J	111	120	Right-handed alpha
Helix 92	AK2	J	122	139	Right-handed alpha
Helix 93	AK3	J	142	161	Right-handed alpha
Helix 94	AK4	K	3	15	Right-handed alpha
Helix 95	AK5	K	20	60	Right-handed alpha
Helix 96	AK6	K	74	99	Right-handed alpha
Helix 97	AK7	K	101	108	Right-handed alpha
Helix 98	AK8	K	111	120	Right-handed alpha
Helix 99	AK9	K	122	142	Right-handed alpha
Helix 100	AL1	K	143	161	Right-handed alpha
Helix 101	AL2	L	3	14	Right-handed alpha
Helix 102	AL3	L	19	32	Right-handed alpha
Helix 103	AL4	L	32	46	Right-handed alpha
Helix 104	AL5	L	46	62	Right-handed alpha
Helix 105	AL6	L	63	67	Right-handed 310
Helix 106	AL7	L	74	99	Right-handed alpha
Helix 107	AL8	L	101	109	Right-handed alpha
Helix 108	AL9	L	111	120	Right-handed alpha
Helix 109	AM1	L	122	139	Right-handed alpha
Helix 110	AM2	L	142	160	Right-handed alpha
Helix 111	AM3	M	3	14	Right-handed alpha
Helix 112	AM4	M	20	33	Right-handed alpha
Helix 113	AM5	M	33	60	Right-handed alpha
Helix 114	AM6	M	74	99	Right-handed alpha
Helix 115	AM7	M	101	108	Right-handed alpha
Helix 116	AM8	M	111	120	Right-handed alpha
Helix 117	AM9	M	122	142	Right-handed alpha
Helix 118	AN1	M	142	161	Right-handed alpha
Helix 119	AN2	N	3	14	Right-handed alpha
Helix 120	AN3	N	19	32	Right-handed alpha
Helix 121	AN4	N	32	46	Right-handed alpha
Helix 122	AN5	N	46	62	Right-handed alpha
Helix 123	AN6	N	63	67	Right-handed 310
Helix 124	AN7	N	74	99	Right-handed alpha
Helix 125	AN8	N	101	109	Right-handed alpha
Helix 126	AN9	N	111	120	Right-handed alpha
Helix 127	AO1	N	122	139	Right-handed alpha
Helix 128	AO2	N	142	161	Right-handed alpha
Helix 129	AO3	O	3	14	Right-handed alpha
Helix 130	AO4	O	20	33	Right-handed alpha
Helix 131	AO5	O	33	47	Right-handed alpha
Helix 132	AO6	O	47	60	Right-handed alpha
Helix 133	AO7	O	74	99	Right-handed alpha
Helix 134	AO8	O	101	108	Right-handed alpha
Helix 135	AO9	O	111	120	Right-handed alpha
Helix 136	AP1	O	122	161	Right-handed alpha
Helix 137	AP2	P	214	217	Right-handed 310
Helix 138	AP3	P	218	226	Right-handed alpha
Helix 139	AP4	P	236	240	Right-handed 310
Helix 140	AP5	P	241	246	Right-handed alpha
Helix 141	AP6	Q	214	217	Right-handed 310
Helix 142	AP7	Q	218	226	Right-handed alpha
Helix 143	AP8	Q	236	240	Right-handed 310
Helix 144	AP9	Q	241	246	Right-handed alpha

There are 4 sheets in PDB entry 8TPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	217	224	anti-parallel
Strand 3	B	298	303	parallel
Strand 4	B	284	292	anti-parallel
Strand 5	B	264	273	anti-parallel
Strand 6	B	250	254	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	217	224	anti-parallel
Strand 3	B	298	303	parallel
Strand 4	B	284	292	anti-parallel
Strand 5	B	264	273	anti-parallel
Strand 6	B	257	261	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	231	232	first strand
Strand 2	b	217	224	anti-parallel
Strand 3	b	298	306	parallel
Strand 4	b	285	292	anti-parallel
Strand 5	b	265	273	anti-parallel
Strand 6	b	250	259	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	32	first strand
Strand 2	C	3	9	anti-parallel
Strand 3	C	49	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPJ