Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TPP entry

There are 2 chains in PDB entry 8TPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16ALA 717
B
 SER 16ALA 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8TPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 31Right-handed 310
Helix 2
AA2
A
32 47Right-handed alpha
Helix 3
AA3
A
72 90Right-handed alpha
Helix 4
AA4
A
103 108Right-handed alpha
Helix 5
AA5
A
111 125Right-handed alpha
Helix 6
AA6
A
126 130Right-handed 310
Helix 7
AA7
A
152 164Right-handed alpha
Helix 8
AA8
A
170 182Right-handed alpha
Helix 9
AA9
A
182 199Right-handed alpha
Helix 10
AB1
A
199 212Right-handed alpha
Helix 11
AB2
A
217 246Right-handed alpha
Helix 12
AB3
A
250 254Right-handed 310
Helix 13
AB4
A
280 289Right-handed alpha
Helix 14
AB5
A
290 319Right-handed alpha
Helix 15
AB6
A
332 358Right-handed alpha
Helix 16
AB7
A
362 392Right-handed alpha
Helix 17
AB8
A
400 408Right-handed alpha
Helix 18
AB9
A
431 451Right-handed alpha
Helix 19
AC1
A
453 465Right-handed alpha
Helix 20
AC2
A
482 493Right-handed alpha
Helix 21
AC3
A
500 518Right-handed alpha
Helix 22
AC4
A
523 545Right-handed alpha
Helix 23
AC5
A
560 585Right-handed alpha
Helix 24
AC6
A
599 625Right-handed alpha
Helix 25
AC7
A
630 642Right-handed alpha
Helix 26
AC8
A
701 715Right-handed alpha
Helix 27
AC9
B
29 31Right-handed 310
Helix 28
AD1
B
32 47Right-handed alpha
Helix 29
AD2
B
72 90Right-handed alpha
Helix 30
AD3
B
103 108Right-handed alpha
Helix 31
AD4
B
111 125Right-handed alpha
Helix 32
AD5
B
126 130Right-handed 310
Helix 33
AD6
B
152 164Right-handed alpha
Helix 34
AD7
B
170 182Right-handed alpha
Helix 35
AD8
B
182 199Right-handed alpha
Helix 36
AD9
B
199 212Right-handed alpha
Helix 37
AE1
B
217 246Right-handed alpha
Helix 38
AE2
B
250 254Right-handed 310
Helix 39
AE3
B
280 289Right-handed alpha
Helix 40
AE4
B
290 319Right-handed alpha
Helix 41
AE5
B
332 358Right-handed alpha
Helix 42
AE6
B
362 392Right-handed alpha
Helix 43
AE7
B
400 408Right-handed alpha
Helix 44
AE8
B
431 451Right-handed alpha
Helix 45
AE9
B
453 465Right-handed alpha
Helix 46
AF1
B
482 493Right-handed alpha
Helix 47
AF2
B
500 518Right-handed alpha
Helix 48
AF3
B
523 545Right-handed alpha
Helix 49
AF4
B
560 585Right-handed alpha
Helix 50
AF5
B
599 625Right-handed alpha
Helix 51
AF6
B
630 642Right-handed alpha
Helix 52
AF7
B
701 715Right-handed alpha
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There are 4 sheets in PDB entry 8TPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
63 70anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 148anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
276 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
63 70anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 148anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 267first strand
Strand 2
B
276 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il