Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TPQ entry

There are 2 chains in PDB entry 8TPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16GLN 715
B
 SER 16GLN 715
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8TPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 50Right-handed alpha
Helix 2
AA2
A
73 90Right-handed alpha
Helix 3
AA3
A
112 125Right-handed alpha
Helix 4
AA4
A
152 165Right-handed alpha
Helix 5
AA5
A
170 199Right-handed alpha
Helix 6
AA6
A
199 212Right-handed alpha
Helix 7
AA7
A
217 247Right-handed alpha
Helix 8
AA8
A
280 289Right-handed alpha
Helix 9
AA9
A
290 320Right-handed alpha
Helix 10
AB1
A
327 329Right-handed 310
Helix 11
AB2
A
330 358Right-handed alpha
Helix 12
AB3
A
362 392Right-handed alpha
Helix 13
AB4
A
396 399Right-handed 310
Helix 14
AB5
A
400 408Right-handed alpha
Helix 15
AB6
A
431 453Right-handed alpha
Helix 16
AB7
A
453 463Right-handed alpha
Helix 17
AB8
A
482 495Right-handed alpha
Helix 18
AB9
A
500 518Right-handed alpha
Helix 19
AC1
A
523 545Right-handed alpha
Helix 20
AC2
A
560 583Right-handed alpha
Helix 21
AC3
A
600 626Right-handed alpha
Helix 22
AC4
A
631 645Right-handed alpha
Helix 23
AC5
A
690 696Right-handed alpha
Helix 24
AC6
A
701 715Right-handed alpha
Helix 25
AC7
B
35 50Right-handed alpha
Helix 26
AC8
B
73 90Right-handed alpha
Helix 27
AC9
B
112 125Right-handed alpha
Helix 28
AD1
B
152 165Right-handed alpha
Helix 29
AD2
B
170 199Right-handed alpha
Helix 30
AD3
B
199 212Right-handed alpha
Helix 31
AD4
B
217 247Right-handed alpha
Helix 32
AD5
B
280 289Right-handed alpha
Helix 33
AD6
B
290 320Right-handed alpha
Helix 34
AD7
B
327 329Right-handed 310
Helix 35
AD8
B
330 358Right-handed alpha
Helix 36
AD9
B
362 392Right-handed alpha
Helix 37
AE1
B
396 399Right-handed 310
Helix 38
AE2
B
400 408Right-handed alpha
Helix 39
AE3
B
431 453Right-handed alpha
Helix 40
AE4
B
453 463Right-handed alpha
Helix 41
AE5
B
482 495Right-handed alpha
Helix 42
AE6
B
500 518Right-handed alpha
Helix 43
AE7
B
523 545Right-handed alpha
Helix 44
AE8
B
560 583Right-handed alpha
Helix 45
AE9
B
600 626Right-handed alpha
Helix 46
AF1
B
631 645Right-handed alpha
Helix 47
AF2
B
690 696Right-handed alpha
Helix 48
AF3
B
701 715Right-handed alpha
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There are 2 sheets in PDB entry 8TPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
64 69anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 149anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 58first strand
Strand 2
B
64 69anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 149anti-parallel
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