Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TPR entry

There are 2 chains in PDB entry 8TPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16GLN 715
B
 SER 16GLN 715
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8TPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 31Right-handed 310
Helix 2
AA2
A
32 49Right-handed alpha
Helix 3
AA3
A
72 90Right-handed alpha
Helix 4
AA4
A
111 125Right-handed alpha
Helix 5
AA5
A
126 130Right-handed 310
Helix 6
AA6
A
152 165Right-handed alpha
Helix 7
AA7
A
170 182Right-handed alpha
Helix 8
AA8
A
182 199Right-handed alpha
Helix 9
AA9
A
199 213Right-handed alpha
Helix 10
AB1
A
217 246Right-handed alpha
Helix 11
AB2
A
250 254Right-handed 310
Helix 12
AB3
A
280 289Right-handed alpha
Helix 13
AB4
A
290 319Right-handed alpha
Helix 14
AB5
A
327 329Right-handed 310
Helix 15
AB6
A
330 358Right-handed alpha
Helix 16
AB7
A
362 392Right-handed alpha
Helix 17
AB8
A
400 407Right-handed alpha
Helix 18
AB9
A
431 453Right-handed alpha
Helix 19
AC1
A
482 494Right-handed alpha
Helix 20
AC2
A
499 518Right-handed alpha
Helix 21
AC3
A
523 546Right-handed alpha
Helix 22
AC4
A
560 585Right-handed alpha
Helix 23
AC5
A
599 625Right-handed alpha
Helix 24
AC6
A
629 643Right-handed alpha
Helix 25
AC7
A
692 697Right-handed alpha
Helix 26
AC8
A
701 715Right-handed alpha
Helix 27
AC9
B
29 31Right-handed 310
Helix 28
AD1
B
32 49Right-handed alpha
Helix 29
AD2
B
72 90Right-handed alpha
Helix 30
AD3
B
111 125Right-handed alpha
Helix 31
AD4
B
126 130Right-handed 310
Helix 32
AD5
B
152 165Right-handed alpha
Helix 33
AD6
B
170 182Right-handed alpha
Helix 34
AD7
B
182 199Right-handed alpha
Helix 35
AD8
B
199 213Right-handed alpha
Helix 36
AD9
B
217 246Right-handed alpha
Helix 37
AE1
B
250 254Right-handed 310
Helix 38
AE2
B
280 289Right-handed alpha
Helix 39
AE3
B
290 319Right-handed alpha
Helix 40
AE4
B
327 329Right-handed 310
Helix 41
AE5
B
330 358Right-handed alpha
Helix 42
AE6
B
362 392Right-handed alpha
Helix 43
AE7
B
400 407Right-handed alpha
Helix 44
AE8
B
431 453Right-handed alpha
Helix 45
AE9
B
482 494Right-handed alpha
Helix 46
AF1
B
499 518Right-handed alpha
Helix 47
AF2
B
523 546Right-handed alpha
Helix 48
AF3
B
560 585Right-handed alpha
Helix 49
AF4
B
599 625Right-handed alpha
Helix 50
AF5
B
629 643Right-handed alpha
Helix 51
AF6
B
692 697Right-handed alpha
Helix 52
AF7
B
701 715Right-handed alpha
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There are 4 sheets in PDB entry 8TPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
66 70anti-parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
147 149anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
277 278anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 56first strand
Strand 2
B
66 70anti-parallel
Strand 3
B
22 24anti-parallel
Strand 4
B
147 149anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 266first strand
Strand 2
B
277 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il