Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TPW entry

There are 6 chains in PDB entry 8TPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	PRO 910
B	THR 3	PRO 910
H	GLU 3	PRO 220
L	ASP 17	PHE 231
C	GLU 1414	ASP 1448
C	LEU 1450	SER 1486

There are 84 helices in PDB entry 8TPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	31	Right-handed alpha
Helix 2	AA2	A	49	60	Right-handed alpha
Helix 3	AA3	A	74	79	Right-handed alpha
Helix 4	AA4	A	104	109	Right-handed alpha
Helix 5	AA5	A	111	118	Right-handed alpha
Helix 6	AA6	A	119	136	Right-handed alpha
Helix 7	AA7	A	139	144	Right-handed 310
Helix 8	AA8	A	171	177	Right-handed alpha
Helix 9	AA9	A	178	191	Right-handed alpha
Helix 10	AB1	A	204	220	Right-handed alpha
Helix 11	AB2	A	236	245	Right-handed alpha
Helix 12	AB3	A	278	285	Right-handed alpha
Helix 13	AB4	A	310	326	Right-handed alpha
Helix 14	AB5	A	328	332	Right-handed 310
Helix 15	AB6	A	344	357	Right-handed alpha
Helix 16	AB7	A	372	377	Right-handed alpha
Helix 17	AB8	A	379	381	Right-handed 310
Helix 18	AB9	A	382	398	Right-handed alpha
Helix 19	AC1	A	414	418	Right-handed 310
Helix 20	AC2	A	481	496	Right-handed alpha
Helix 21	AC3	A	502	514	Right-handed alpha
Helix 22	AC4	A	527	541	Right-handed alpha
Helix 23	AC5	A	577	582	Right-handed alpha
Helix 24	AC6	A	582	597	Right-handed alpha
Helix 25	AC7	A	603	609	Right-handed alpha
Helix 26	AC8	A	619	640	Right-handed alpha
Helix 27	AC9	A	653	662	Right-handed alpha
Helix 28	AD1	A	666	684	Right-handed alpha
Helix 29	AD2	A	697	704	Right-handed alpha
Helix 30	AD3	A	727	742	Right-handed alpha
Helix 31	AD4	A	756	763	Right-handed 310
Helix 32	AD5	A	764	770	Right-handed alpha
Helix 33	AD6	A	797	805	Right-handed alpha
Helix 34	AD7	A	810	822	Right-handed alpha
Helix 35	AD8	A	835	846	Right-handed alpha
Helix 36	AD9	A	864	877	Right-handed alpha
Helix 37	AE1	A	883	888	Right-handed 310
Helix 38	AE2	B	4	32	Right-handed alpha
Helix 39	AE3	B	49	60	Right-handed alpha
Helix 40	AE4	B	74	79	Right-handed alpha
Helix 41	AE5	B	104	109	Right-handed alpha
Helix 42	AE6	B	111	118	Right-handed alpha
Helix 43	AE7	B	119	136	Right-handed alpha
Helix 44	AE8	B	139	144	Right-handed 310
Helix 45	AE9	B	171	176	Right-handed alpha
Helix 46	AF1	B	180	191	Right-handed alpha
Helix 47	AF2	B	204	219	Right-handed alpha
Helix 48	AF3	B	236	245	Right-handed alpha
Helix 49	AF4	B	278	285	Right-handed alpha
Helix 50	AF5	B	310	326	Right-handed alpha
Helix 51	AF6	B	344	355	Right-handed alpha
Helix 52	AF7	B	379	381	Right-handed 310
Helix 53	AF8	B	382	398	Right-handed alpha
Helix 54	AF9	B	414	418	Right-handed 310
Helix 55	AG1	B	481	497	Right-handed alpha
Helix 56	AG2	B	502	513	Right-handed alpha
Helix 57	AG3	B	527	540	Right-handed alpha
Helix 58	AG4	B	576	581	Right-handed alpha
Helix 59	AG5	B	582	597	Right-handed alpha
Helix 60	AG6	B	604	610	Right-handed alpha
Helix 61	AG7	B	619	641	Right-handed alpha
Helix 62	AG8	B	652	663	Right-handed alpha
Helix 63	AG9	B	666	682	Right-handed alpha
Helix 64	AH1	B	701	705	Right-handed 310
Helix 65	AH2	B	727	742	Right-handed alpha
Helix 66	AH3	B	756	761	Right-handed alpha
Helix 67	AH4	B	762	771	Right-handed alpha
Helix 68	AH5	B	797	807	Right-handed alpha
Helix 69	AH6	B	810	822	Right-handed alpha
Helix 70	AH7	B	835	846	Right-handed alpha
Helix 71	AH8	B	865	877	Right-handed alpha
Helix 72	AH9	B	883	888	Right-handed 310
Helix 73	AI1	H	30	34	Right-handed 310
Helix 74	AI2	H	55	59	Right-handed 310
Helix 75	AI3	H	91	95	Right-handed 310
Helix 76	AI4	H	163	165	Right-handed 310
Helix 77	AI5	L	100	104	Right-handed 310
Helix 78	AI6	L	143	150	Right-handed alpha
Helix 79	AI7	L	205	211	Right-handed alpha
Helix 80	AI8	C	1415	1426	Right-handed alpha
Helix 81	AI9	C	1441	1446	Right-handed alpha
Helix 82	AJ1	C	1448	1463	Right-handed alpha
Helix 83	AJ2	C	1470	1475	Right-handed alpha
Helix 84	AJ3	C	1477	1486	Right-handed alpha

There are 23 sheets in PDB entry 8TPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	148	153	parallel
Strand 3	A	224	231	parallel
Strand 4	A	269	277	anti-parallel
Strand 5	A	34	42	anti-parallel
Strand 6	A	290	299	anti-parallel
Strand 7	A	448	456	anti-parallel
Strand 8	A	437	443	anti-parallel
Strand 9	A	334	336	parallel
Strand 10	A	367	370	parallel
Strand 11	A	420	422	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	904	905	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	427	428	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	479	first strand
Strand 2	A	519	525	anti-parallel
Strand 3	A	549	552	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	649	first strand
Strand 2	A	560	563	parallel
Strand 3	A	825	827	parallel
Strand 4	A	853	855	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	716	first strand
Strand 2	A	722	726	anti-parallel
Strand 3	A	689	693	anti-parallel
Strand 4	A	746	747	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	149	153	parallel
Strand 3	B	224	231	parallel
Strand 4	B	269	277	anti-parallel
Strand 5	B	34	41	anti-parallel
Strand 6	B	290	299	anti-parallel
Strand 7	B	448	455	anti-parallel
Strand 8	B	437	443	anti-parallel
Strand 9	B	334	335	parallel
Strand 10	B	367	369	parallel
Strand 11	B	420	422	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	93	94	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	904	905	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	427	428	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	478	first strand
Strand 2	B	520	525	anti-parallel
Strand 3	B	548	551	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	783	first strand
Strand 2	B	647	650	parallel
Strand 3	B	560	564	parallel
Strand 4	B	825	828	parallel
Strand 5	B	853	855	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	716	first strand
Strand 2	B	722	723	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	9	first strand
Strand 2	H	20	27	anti-parallel
Strand 3	H	82	87	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	36	41	anti-parallel
Strand 5	H	47	53	anti-parallel
Strand 6	H	62	64	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	114	118	parallel
Strand 3	H	96	102	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	144	152	anti-parallel
Strand 3	H	183	190	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	202	207	anti-parallel
Strand 3	H	212	217	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	21	22	first strand
Strand 2	L	35	41	anti-parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	83	88	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	74	75	first strand
Strand 2	L	66	70	anti-parallel
Strand 3	L	54	59	anti-parallel
Strand 4	L	105	111	anti-parallel
Strand 5	L	124	126	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	140	first strand
Strand 2	L	151	161	anti-parallel
Strand 3	L	195	204	anti-parallel
Strand 4	L	181	185	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	167	170	first strand
Strand 2	L	216	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPW