Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TPX entry

There are 6 chains in PDB entry 8TPX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	PRO 910
B	THR 3	LEU 908
C	GLU 1414	ASP 1448
C	LEU 1450	THR 1485
H	GLU 3	PRO 220
L	ASP 17	PHE 231

There are 74 helices in PDB entry 8TPX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	31	Right-handed alpha
Helix 2	AA2	A	55	60	Right-handed alpha
Helix 3	AA3	A	111	117	Right-handed alpha
Helix 4	AA4	A	119	135	Right-handed alpha
Helix 5	AA5	A	139	144	Right-handed 310
Helix 6	AA6	A	184	191	Right-handed alpha
Helix 7	AA7	A	201	203	Right-handed 310
Helix 8	AA8	A	204	220	Right-handed alpha
Helix 9	AA9	A	237	245	Right-handed alpha
Helix 10	AB1	A	278	285	Right-handed alpha
Helix 11	AB2	A	310	326	Right-handed alpha
Helix 12	AB3	A	328	332	Right-handed 310
Helix 13	AB4	A	344	358	Right-handed alpha
Helix 14	AB5	A	372	377	Right-handed alpha
Helix 15	AB6	A	379	381	Right-handed 310
Helix 16	AB7	A	382	398	Right-handed alpha
Helix 17	AB8	A	488	496	Right-handed alpha
Helix 18	AB9	A	510	517	Right-handed 310
Helix 19	AC1	A	533	538	Right-handed alpha
Helix 20	AC2	A	576	582	Right-handed alpha
Helix 21	AC3	A	582	597	Right-handed alpha
Helix 22	AC4	A	603	610	Right-handed alpha
Helix 23	AC5	A	619	640	Right-handed alpha
Helix 24	AC6	A	651	653	Right-handed 310
Helix 25	AC7	A	654	662	Right-handed alpha
Helix 26	AC8	A	666	683	Right-handed alpha
Helix 27	AC9	A	697	704	Right-handed alpha
Helix 28	AD1	A	729	741	Right-handed alpha
Helix 29	AD2	A	763	771	Right-handed alpha
Helix 30	AD3	A	797	807	Right-handed alpha
Helix 31	AD4	A	811	820	Right-handed alpha
Helix 32	AD5	A	864	876	Right-handed alpha
Helix 33	AD6	A	883	888	Right-handed 310
Helix 34	AD7	B	4	31	Right-handed alpha
Helix 35	AD8	B	49	60	Right-handed alpha
Helix 36	AD9	B	113	118	Right-handed alpha
Helix 37	AE1	B	119	136	Right-handed alpha
Helix 38	AE2	B	139	144	Right-handed 310
Helix 39	AE3	B	181	191	Right-handed alpha
Helix 40	AE4	B	201	203	Right-handed 310
Helix 41	AE5	B	204	219	Right-handed alpha
Helix 42	AE6	B	250	254	Right-handed 310
Helix 43	AE7	B	278	285	Right-handed alpha
Helix 44	AE8	B	310	326	Right-handed alpha
Helix 45	AE9	B	346	354	Right-handed alpha
Helix 46	AF1	B	383	393	Right-handed alpha
Helix 47	AF2	B	481	497	Right-handed alpha
Helix 48	AF3	B	502	514	Right-handed alpha
Helix 49	AF4	B	527	540	Right-handed alpha
Helix 50	AF5	B	577	582	Right-handed alpha
Helix 51	AF6	B	582	597	Right-handed alpha
Helix 52	AF7	B	598	600	Right-handed 310
Helix 53	AF8	B	603	610	Right-handed alpha
Helix 54	AF9	B	619	640	Right-handed alpha
Helix 55	AG1	B	653	662	Right-handed alpha
Helix 56	AG2	B	666	682	Right-handed alpha
Helix 57	AG3	B	697	704	Right-handed alpha
Helix 58	AG4	B	727	739	Right-handed alpha
Helix 59	AG5	B	758	762	Right-handed 310
Helix 60	AG6	B	763	771	Right-handed alpha
Helix 61	AG7	B	797	807	Right-handed alpha
Helix 62	AG8	B	810	822	Right-handed alpha
Helix 63	AG9	B	835	846	Right-handed alpha
Helix 64	AH1	B	864	878	Right-handed alpha
Helix 65	AH2	B	883	888	Right-handed 310
Helix 66	AH3	C	1415	1429	Right-handed alpha
Helix 67	AH4	C	1441	1446	Right-handed alpha
Helix 68	AH5	C	1450	1463	Right-handed alpha
Helix 69	AH6	C	1470	1475	Right-handed alpha
Helix 70	AH7	C	1477	1481	Right-handed 310
Helix 71	AH8	H	30	34	Right-handed 310
Helix 72	AH9	H	178	182	Right-handed 310
Helix 73	AI1	L	143	150	Right-handed alpha
Helix 74	AI2	L	204	209	Right-handed alpha

There are 16 sheets in PDB entry 8TPX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	149	154	parallel
Strand 3	A	224	230	parallel
Strand 4	A	270	277	anti-parallel
Strand 5	A	34	42	anti-parallel
Strand 6	A	290	299	anti-parallel
Strand 7	A	448	456	anti-parallel
Strand 8	A	437	443	anti-parallel
Strand 9	A	334	336	parallel
Strand 10	A	368	370	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	903	904	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	427	428	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	524	525	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	691	692	first strand
Strand 2	A	722	724	anti-parallel
Strand 3	A	715	716	anti-parallel
Strand 4	A	809	810	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	149	153	parallel
Strand 3	B	224	230	parallel
Strand 4	B	270	277	anti-parallel
Strand 5	B	34	42	anti-parallel
Strand 6	B	290	299	anti-parallel
Strand 7	B	448	456	anti-parallel
Strand 8	B	437	443	anti-parallel
Strand 9	B	332	336	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	477	first strand
Strand 2	B	521	525	anti-parallel
Strand 3	B	548	549	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	782	first strand
Strand 2	B	647	650	parallel
Strand 3	B	560	564	parallel
Strand 4	B	825	828	parallel
Strand 5	B	853	855	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	693	first strand
Strand 2	B	722	726	anti-parallel
Strand 3	B	715	716	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	22	first strand
Strand 2	H	85	86	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	49	first strand
Strand 2	H	38	41	anti-parallel
Strand 3	H	96	100	anti-parallel
Strand 4	H	114	116	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	159	first strand
Strand 2	H	205	206	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	27	29	first strand
Strand 2	L	124	128	parallel
Strand 3	L	106	111	anti-parallel
Strand 4	L	54	59	anti-parallel
Strand 5	L	66	70	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	40	first strand
Strand 2	L	91	96	anti-parallel
Strand 3	L	83	88	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	138	140	first strand
Strand 2	L	155	157	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	216	218	first strand
Strand 2	L	227	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TPX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TPX