Analysis of interatomic Contacts of Structural Units in PDB entry:
8TQ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TQ1 entry

There are 13 chains in PDB entry 8TQ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	ARG 503
B	LEU 520	ASP 664
C	VAL 2	VAL 111
D	ALA 3	LEU 107
J	ASN 33	VAL 506
K	LEU 520	ASP 664
M	VAL 2	VAL 111
N	ALA 3	LEU 107
E	ASN 33	VAL 505
F	LEU 520	ASP 664
G	VAL 2	VAL 111
I	ALA 3	LEU 107
H	ASN 104	TYR 144

There are 55 helices in PDB entry 8TQ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	117	Right-handed alpha
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	139	151	Right-handed 310
Helix 4	AA4	A	195	198	Right-handed 310
Helix 5	AA5	A	334	354	Right-handed alpha
Helix 6	AA6	A	368	373	Right-handed alpha
Helix 7	AA7	A	387	391	Right-handed 310
Helix 8	AA8	A	475	484	Right-handed alpha
Helix 9	AA9	B	523	528	Right-handed 310
Helix 10	AB1	B	536	542	Right-handed alpha
Helix 11	AB2	B	569	596	Right-handed alpha
Helix 12	AB3	B	618	625	Right-handed alpha
Helix 13	AB4	B	627	635	Right-handed alpha
Helix 14	AB5	B	638	661	Right-handed alpha
Helix 15	AB6	C	28	32	Right-handed 310
Helix 16	AB7	C	61	64	Right-handed 310
Helix 17	AB8	C	83	87	Right-handed 310
Helix 18	AB9	D	79	83	Right-handed 310
Helix 19	AC1	D	92	95	Right-handed alpha
Helix 20	AC2	J	98	117	Right-handed alpha
Helix 21	AC3	J	122	126	Right-handed 310
Helix 22	AC4	J	139	151	Right-handed 310
Helix 23	AC5	J	195	198	Right-handed 310
Helix 24	AC6	J	334	354	Right-handed alpha
Helix 25	AC7	J	368	373	Right-handed alpha
Helix 26	AC8	J	387	390	Right-handed 310
Helix 27	AC9	J	475	484	Right-handed alpha
Helix 28	AD1	K	523	528	Right-handed 310
Helix 29	AD2	K	536	542	Right-handed alpha
Helix 30	AD3	K	569	596	Right-handed alpha
Helix 31	AD4	K	618	625	Right-handed alpha
Helix 32	AD5	K	627	635	Right-handed alpha
Helix 33	AD6	K	638	659	Right-handed alpha
Helix 34	AD7	M	28	32	Right-handed 310
Helix 35	AD8	M	61	64	Right-handed 310
Helix 36	AD9	M	83	87	Right-handed 310
Helix 37	AE1	N	79	83	Right-handed 310
Helix 38	AE2	E	98	117	Right-handed alpha
Helix 39	AE3	E	122	126	Right-handed 310
Helix 40	AE4	E	139	151	Right-handed 310
Helix 41	AE5	E	195	198	Right-handed 310
Helix 42	AE6	E	335	354	Right-handed alpha
Helix 43	AE7	E	368	373	Right-handed alpha
Helix 44	AE8	E	475	480	Right-handed alpha
Helix 45	AE9	F	536	542	Right-handed alpha
Helix 46	AF1	F	543	545	Right-handed 310
Helix 47	AF2	F	570	571	Right-handed 310
Helix 48	AF3	F	572	596	Right-handed alpha
Helix 49	AF4	F	619	625	Right-handed alpha
Helix 50	AF5	F	627	635	Right-handed alpha
Helix 51	AF6	F	638	660	Right-handed alpha
Helix 52	AF7	G	28	32	Right-handed 310
Helix 53	AF8	G	61	64	Right-handed 310
Helix 54	AF9	G	83	87	Right-handed 310
Helix 55	AG1	I	79	83	Right-handed 310

There are 45 sheets in PDB entry 8TQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	236	245	anti-parallel
Strand 5	A	83	94	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	284	302	anti-parallel
Strand 4	A	329	333	anti-parallel
Strand 5	A	414	421	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	302	anti-parallel
Strand 3	A	441	456	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	358	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	312	first strand
Strand 2	A	315	320	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	107	110	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	107	110	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	100	103	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	35	38	anti-parallel
Strand 5	D	45	48	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	91	anti-parallel
Strand 4	D	96	98	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	62	67	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	494	499	first strand
Strand 2	J	35	40	anti-parallel
Strand 3	K	603	609	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	47	first strand
Strand 2	J	486	491	anti-parallel
Strand 3	J	223	228	anti-parallel
Strand 4	J	242	245	anti-parallel
Strand 5	J	83	86	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	76	first strand
Strand 2	J	53	56	parallel
Strand 3	J	216	218	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	91	94	first strand
Strand 2	J	236	239	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	169	177	first strand
Strand 2	J	154	162	anti-parallel
Strand 3	J	129	133	anti-parallel
Strand 4	J	190	193	anti-parallel
Strand 5	J	181	183	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	200	203	first strand
Strand 2	J	432	435	parallel
Strand 3	J	423	424	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	259	261	first strand
Strand 2	J	441	456	anti-parallel
Strand 3	J	284	302	anti-parallel
Strand 4	J	329	333	anti-parallel
Strand 5	J	414	421	anti-parallel
Strand 6	J	381	385	anti-parallel
Strand 7	J	374	378	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	271	274	first strand
Strand 2	J	284	302	anti-parallel
Strand 3	J	441	456	anti-parallel
Strand 4	J	465	470	anti-parallel
Strand 5	J	358	361	parallel
Strand 6	J	393	395	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	304	312	first strand
Strand 2	J	315	320	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	8	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	45	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	88	95	anti-parallel
Strand 5	M	100	103	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	59	first strand
Strand 2	M	45	51	anti-parallel
Strand 3	M	34	39	anti-parallel
Strand 4	M	88	95	anti-parallel
Strand 5	M	107	109	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	91	anti-parallel
Strand 4	N	35	38	anti-parallel
Strand 5	N	45	48	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	91	anti-parallel
Strand 4	N	96	98	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	67	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	86	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	53	56	parallel
Strand 3	E	216	218	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	203	first strand
Strand 2	E	433	435	parallel
Strand 3	E	423	424	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	441	456	anti-parallel
Strand 3	E	284	302	anti-parallel
Strand 4	E	330	334	anti-parallel
Strand 5	E	413	421	anti-parallel
Strand 6	E	381	385	anti-parallel
Strand 7	E	374	378	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	274	first strand
Strand 2	E	284	302	anti-parallel
Strand 3	E	441	456	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	358	361	parallel
Strand 6	E	393	395	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	307	312	first strand
Strand 2	E	315	317	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	88	95	anti-parallel
Strand 5	G	100	103	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	88	95	anti-parallel
Strand 5	G	107	109	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	92	anti-parallel
Strand 4	I	35	38	anti-parallel
Strand 5	I	45	48	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	92	anti-parallel
Strand 4	I	95	98	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	24	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	62	67	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	113	115	first strand
Strand 2	H	118	120	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TQ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TQ1