Analysis of interatomic Contacts of Structural Units in PDB entry:
8TQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TQB entry

There are 2 chains in PDB entry 8TQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 30LYS 832
B
 ARG 30LYS 832
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8TQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 82Right-handed alpha
Helix 2
AA2
A
101 110Right-handed alpha
Helix 3
AA3
A
111 113Right-handed 310
Helix 4
AA4
A
150 162Right-handed alpha
Helix 5
AA5
A
163 165Right-handed 310
Helix 6
AA6
A
175 180Right-handed 310
Helix 7
AA7
A
193 208Right-handed alpha
Helix 8
AA8
A
221 237Right-handed alpha
Helix 9
AA9
A
255 266Right-handed alpha
Helix 10
AB1
A
277 292Right-handed alpha
Helix 11
AB2
A
313 318Right-handed alpha
Helix 12
AB3
A
330 339Right-handed alpha
Helix 13
AB4
A
348 360Right-handed alpha
Helix 14
AB5
A
387 389Right-handed 310
Helix 15
AB6
A
390 412Right-handed alpha
Helix 16
AB7
A
419 423Right-handed 310
Helix 17
AB8
A
426 433Right-handed alpha
Helix 18
AB9
A
493 497Right-handed 310
Helix 19
AC1
A
574 598Right-handed alpha
Helix 20
AC2
A
612 633Right-handed alpha
Helix 21
AC3
A
640 663Right-handed alpha
Helix 22
AC4
A
682 694Right-handed alpha
Helix 23
AC5
A
695 703Right-handed alpha
Helix 24
AC6
A
736 741Right-handed alpha
Helix 25
AC7
A
741 746Right-handed alpha
Helix 26
AC8
A
746 753Right-handed alpha
Helix 27
AC9
A
768 792Right-handed alpha
Helix 28
AD1
A
795 818Right-handed alpha
Helix 29
AD2
A
819 826Right-handed alpha
Helix 30
AD3
B
66 82Right-handed alpha
Helix 31
AD4
B
101 110Right-handed alpha
Helix 32
AD5
B
111 113Right-handed 310
Helix 33
AD6
B
150 162Right-handed alpha
Helix 34
AD7
B
163 165Right-handed 310
Helix 35
AD8
B
175 180Right-handed 310
Helix 36
AD9
B
193 208Right-handed alpha
Helix 37
AE1
B
221 237Right-handed alpha
Helix 38
AE2
B
255 266Right-handed alpha
Helix 39
AE3
B
277 292Right-handed alpha
Helix 40
AE4
B
313 318Right-handed alpha
Helix 41
AE5
B
330 339Right-handed alpha
Helix 42
AE6
B
348 360Right-handed alpha
Helix 43
AE7
B
387 389Right-handed 310
Helix 44
AE8
B
390 412Right-handed alpha
Helix 45
AE9
B
419 423Right-handed 310
Helix 46
AF1
B
426 433Right-handed alpha
Helix 47
AF2
B
493 497Right-handed 310
Helix 48
AF3
B
574 598Right-handed alpha
Helix 49
AF4
B
612 633Right-handed alpha
Helix 50
AF5
B
640 663Right-handed alpha
Helix 51
AF6
B
682 694Right-handed alpha
Helix 52
AF7
B
695 703Right-handed alpha
Helix 53
AF8
B
736 741Right-handed alpha
Helix 54
AF9
B
741 746Right-handed alpha
Helix 55
AG1
B
746 751Right-handed alpha
Helix 56
AG2
B
768 792Right-handed alpha
Helix 57
AG3
B
795 818Right-handed alpha
Helix 58
AG4
B
819 826Right-handed alpha
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There are 14 sheets in PDB entry 8TQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
39 45parallel
Strand 4
A
144 146parallel
Strand 5
A
168 169parallel
Strand 6
A
187 188parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
57 60anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 247first strand
Strand 2
A
212 218parallel
Strand 3
A
271 275parallel
Strand 4
A
296 299parallel
Strand 5
A
321 325parallel
Strand 6
A
466 474anti-parallel
Strand 7
A
477 486anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 518first strand
Strand 2
A
532 533anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 542first strand
Strand 2
A
545 548anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 554first strand
Strand 2
A
563 564anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 718first strand
Strand 2
A
726 729anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
91 97anti-parallel
Strand 3
B
39 45parallel
Strand 4
B
144 146parallel
Strand 5
B
168 169parallel
Strand 6
B
187 188parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
57 60anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 247first strand
Strand 2
B
212 218parallel
Strand 3
B
271 275parallel
Strand 4
B
296 299parallel
Strand 5
B
321 325parallel
Strand 6
B
466 474anti-parallel
Strand 7
B
477 486anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 518first strand
Strand 2
B
532 533anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
538 542first strand
Strand 2
B
545 548anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
553 554first strand
Strand 2
B
563 564anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
715 718first strand
Strand 2
B
726 729anti-parallel
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