Analysis of interatomic Contacts of Structural Units in PDB entry:
8TQC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TQC entry

There are 3 chains in PDB entry 8TQC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 3	LEU 1742
D	SER 11	LEU 2174
A	MET 1	MET 1

There are150 helices in PDB entry 8TQC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	37	44	Right-handed alpha
Helix 2	AA2	C	65	84	Right-handed alpha
Helix 3	AA3	C	105	108	Right-handed 310
Helix 4	AA4	C	109	121	Right-handed alpha
Helix 5	AA5	C	125	130	Right-handed alpha
Helix 6	AA6	C	140	150	Right-handed alpha
Helix 7	AA7	C	152	171	Right-handed alpha
Helix 8	AA8	C	181	206	Right-handed alpha
Helix 9	AA9	C	223	247	Right-handed alpha
Helix 10	AB1	C	250	263	Right-handed alpha
Helix 11	AB2	C	269	275	Right-handed alpha
Helix 12	AB3	C	276	283	Right-handed alpha
Helix 13	AB4	C	283	288	Right-handed alpha
Helix 14	AB5	C	290	310	Right-handed alpha
Helix 15	AB6	C	346	352	Right-handed alpha
Helix 16	AB7	C	355	373	Right-handed alpha
Helix 17	AB8	C	374	377	Right-handed 310
Helix 18	AB9	C	392	397	Right-handed 310
Helix 19	AC1	C	400	404	Right-handed 310
Helix 20	AC2	C	410	437	Right-handed alpha
Helix 21	AC3	C	452	465	Right-handed alpha
Helix 22	AC4	C	476	483	Right-handed alpha
Helix 23	AC5	C	499	513	Right-handed alpha
Helix 24	AC6	C	523	531	Right-handed alpha
Helix 25	AC7	C	570	575	Right-handed alpha
Helix 26	AC8	C	576	578	Right-handed 310
Helix 27	AC9	C	587	606	Right-handed alpha
Helix 28	AD1	C	611	624	Right-handed alpha
Helix 29	AD2	C	730	735	Right-handed 310
Helix 30	AD3	C	749	754	Right-handed alpha
Helix 31	AD4	C	755	758	Right-handed 310
Helix 32	AD5	C	761	772	Right-handed alpha
Helix 33	AD6	C	772	784	Right-handed alpha
Helix 34	AD7	C	787	791	Right-handed 310
Helix 35	AD8	C	806	813	Right-handed alpha
Helix 36	AD9	C	814	816	Right-handed 310
Helix 37	AE1	C	826	835	Right-handed alpha
Helix 38	AE2	C	840	857	Right-handed alpha
Helix 39	AE3	C	872	881	Right-handed alpha
Helix 40	AE4	C	882	884	Right-handed 310
Helix 41	AE5	C	889	905	Right-handed alpha
Helix 42	AE6	C	918	932	Right-handed alpha
Helix 43	AE7	C	933	934	Right-handed 310
Helix 44	AE8	C	935	939	Right-handed 310
Helix 45	AE9	C	947	958	Right-handed alpha
Helix 46	AF1	C	970	975	Right-handed alpha
Helix 47	AF2	C	977	981	Right-handed 310
Helix 48	AF3	C	992	1002	Right-handed alpha
Helix 49	AF4	C	1035	1046	Right-handed alpha
Helix 50	AF5	C	1050	1062	Right-handed alpha
Helix 51	AF6	C	1067	1084	Right-handed alpha
Helix 52	AF7	C	1085	1092	Right-handed 310
Helix 53	AF8	C	1093	1101	Right-handed alpha
Helix 54	AF9	C	1110	1116	Right-handed alpha
Helix 55	AG1	C	1124	1137	Right-handed alpha
Helix 56	AG2	C	1144	1150	Right-handed alpha
Helix 57	AG3	C	1150	1161	Right-handed alpha
Helix 58	AG4	C	1165	1180	Right-handed alpha
Helix 59	AG5	C	1206	1211	Right-handed alpha
Helix 60	AG6	C	1219	1232	Right-handed alpha
Helix 61	AG7	C	1277	1289	Right-handed alpha
Helix 62	AG8	C	1289	1303	Right-handed alpha
Helix 63	AG9	C	1314	1319	Right-handed alpha
Helix 64	AH1	C	1320	1326	Right-handed alpha
Helix 65	AH2	C	1338	1346	Right-handed alpha
Helix 66	AH3	C	1355	1360	Right-handed alpha
Helix 67	AH4	C	1360	1370	Right-handed alpha
Helix 68	AH5	C	1371	1375	Right-handed 310
Helix 69	AH6	C	1379	1386	Right-handed alpha
Helix 70	AH7	C	1390	1395	Right-handed alpha
Helix 71	AH8	C	1424	1427	Right-handed 310
Helix 72	AH9	C	1428	1434	Right-handed alpha
Helix 73	AI1	C	1436	1452	Right-handed alpha
Helix 74	AI2	C	1461	1475	Right-handed alpha
Helix 75	AI3	C	1479	1489	Right-handed alpha
Helix 76	AI4	C	1496	1513	Right-handed alpha
Helix 77	AI5	C	1530	1543	Right-handed alpha
Helix 78	AI6	C	1543	1548	Right-handed alpha
Helix 79	AI7	C	1552	1567	Right-handed alpha
Helix 80	AI8	C	1575	1595	Right-handed alpha
Helix 81	AI9	C	1610	1622	Right-handed alpha
Helix 82	AJ1	C	1631	1639	Right-handed alpha
Helix 83	AJ2	C	1715	1724	Right-handed alpha
Helix 84	AJ3	C	1725	1727	Right-handed 310
Helix 85	AJ4	D	51	63	Right-handed alpha
Helix 86	AJ5	D	108	110	Right-handed 310
Helix 87	AJ6	D	112	134	Right-handed alpha
Helix 88	AJ7	D	190	200	Right-handed alpha
Helix 89	AJ8	D	226	240	Right-handed alpha
Helix 90	AJ9	D	336	349	Right-handed alpha
Helix 91	AK1	D	1071	1078	Right-handed alpha
Helix 92	AK2	D	1087	1092	Right-handed 310
Helix 93	AK3	D	1106	1110	Right-handed 310
Helix 94	AK4	D	1127	1135	Right-handed alpha
Helix 95	AK5	D	1141	1150	Right-handed alpha
Helix 96	AK6	D	1155	1168	Right-handed alpha
Helix 97	AK7	D	1185	1196	Right-handed alpha
Helix 98	AK8	D	1222	1244	Right-handed alpha
Helix 99	AK9	D	1255	1260	Right-handed alpha
Helix 100	AL1	D	1262	1267	Right-handed 310
Helix 101	AL2	D	1275	1295	Right-handed alpha
Helix 102	AL3	D	1309	1316	Right-handed alpha
Helix 103	AL4	D	1348	1355	Right-handed 310
Helix 104	AL5	D	1378	1399	Right-handed alpha
Helix 105	AL6	D	1448	1465	Right-handed alpha
Helix 106	AL7	D	1619	1623	Right-handed 310
Helix 107	AL8	D	1663	1676	Right-handed alpha
Helix 108	AL9	D	1678	1683	Right-handed alpha
Helix 109	AM1	D	1692	1697	Right-handed alpha
Helix 110	AM2	D	1709	1721	Right-handed alpha
Helix 111	AM3	D	1739	1749	Right-handed alpha
Helix 112	AM4	D	1836	1852	Right-handed alpha
Helix 113	AM5	D	1871	1880	Right-handed alpha
Helix 114	AM6	D	1881	1896	Right-handed alpha
Helix 115	AM7	D	1896	1902	Right-handed alpha
Helix 116	AM8	D	1950	1955	Right-handed alpha
Helix 117	AM9	D	2078	2083	Right-handed 310
Helix 118	AN1	D	2085	2090	Right-handed 310
Helix 119	AN2	D	2119	2123	Right-handed 310
Helix 120	AN3	D	2125	2142	Right-handed alpha
Helix 121	AN4	D	2143	2145	Right-handed 310
Helix 122	AN5	D	2157	2174	Right-handed alpha
Helix 123	AN6	A	2	13	Right-handed alpha
Helix 124	AN7	A	60	71	Right-handed alpha
Helix 125	AN8	A	104	111	Right-handed alpha
Helix 126	AN9	A	124	145	Right-handed alpha
Helix 127	AO1	A	153	155	Right-handed 310
Helix 128	AO2	A	201	206	Right-handed alpha
Helix 129	AO3	A	214	230	Right-handed alpha
Helix 130	AO4	A	251	260	Right-handed alpha
Helix 131	AO5	A	292	300	Right-handed alpha
Helix 132	AO6	A	306	316	Right-handed alpha
Helix 133	AO7	A	325	332	Right-handed alpha
Helix 134	AO8	B	8	13	Right-handed alpha
Helix 135	AO9	B	17	25	Right-handed alpha
Helix 136	AP1	B	25	30	Right-handed alpha
Helix 137	AP2	B	33	55	Right-handed alpha
Helix 138	AP3	B	58	75	Right-handed alpha
Helix 139	AP4	B	82	98	Right-handed alpha
Helix 140	AP5	B	104	120	Right-handed alpha
Helix 141	AP6	B	131	146	Right-handed alpha
Helix 142	AP7	B	155	167	Right-handed alpha
Helix 143	AP8	B	172	183	Right-handed alpha
Helix 144	AP9	B	184	186	Right-handed 310
Helix 145	AQ1	B	187	192	Right-handed alpha
Helix 146	AQ2	B	193	209	Right-handed alpha
Helix 147	AQ3	B	213	220	Right-handed alpha
Helix 148	AQ4	B	225	241	Right-handed alpha
Helix 149	AQ5	B	242	244	Right-handed 310
Helix 150	AQ6	B	245	256	Right-handed alpha

There are 14 sheets in PDB entry 8TQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	133	134	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1646	1650	first strand
Strand 2	C	1681	1685	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	16	first strand
Strand 2	D	1926	1930	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	173	181	anti-parallel
Strand 3	D	161	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	77	85	anti-parallel
Strand 3	D	28	36	anti-parallel
Strand 4	D	100	106	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	139	first strand
Strand 2	D	142	144	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	188	first strand
Strand 2	D	284	286	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	208	first strand
Strand 2	D	213	223	anti-parallel
Strand 3	D	264	271	anti-parallel
Strand 4	D	274	279	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1345	1347	first strand
Strand 2	D	1336	1338	anti-parallel
Strand 3	D	1765	1766	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1415	1418	first strand
Strand 2	D	1369	1376	parallel
Strand 3	D	1638	1645	parallel
Strand 4	D	1685	1691	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1815	1821	first strand
Strand 2	D	1802	1808	anti-parallel
Strand 3	D	1788	1796	anti-parallel
Strand 4	D	1858	1864	parallel
Strand 5	D	1914	1919	parallel
Strand 6	D	2094	2100	anti-parallel
Strand 7	D	2065	2070	anti-parallel
Strand 8	D	1958	1963	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	33	38	anti-parallel
Strand 3	A	49	54	anti-parallel
Strand 4	A	92	98	anti-parallel
Strand 5	A	81	87	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	157	160	anti-parallel
Strand 3	A	167	171	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	178	179	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TQC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TQC