Analysis of interatomic Contacts of Structural Units in PDB entry:
8TQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TQM entry

There is 1 chain in PDB entry 8TQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 113TRP 1293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8TQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 162Right-handed alpha
Helix 2
AA2
A
169 176Right-handed alpha
Helix 3
AA3
A
187 226Right-handed alpha
Helix 4
AA4
A
226 238Right-handed alpha
Helix 5
AA5
A
464 522Right-handed alpha
Helix 6
AA6
A
545 563Right-handed alpha
Helix 7
AA7
A
569 597Right-handed alpha
Helix 8
AA8
A
607 635Right-handed alpha
Helix 9
AA9
A
635 649Right-handed alpha
Helix 10
AB1
A
649 655Right-handed alpha
Helix 11
AB2
A
662 667Right-handed alpha
Helix 12
AB3
A
672 700Right-handed alpha
Helix 13
AB4
A
718 726Right-handed alpha
Helix 14
AB5
A
727 756Right-handed alpha
Helix 15
AB6
A
770 774Right-handed 310
Helix 16
AB7
A
780 800Right-handed alpha
Helix 17
AB8
A
802 823Right-handed alpha
Helix 18
AB9
A
824 829Right-handed alpha
Helix 19
AC1
A
833 836Right-handed 310
Helix 20
AC2
A
844 849Right-handed alpha
Helix 21
AC3
A
851 859Right-handed alpha
Helix 22
AC4
A
868 879Right-handed alpha
Helix 23
AC5
A
902 907Right-handed alpha
Helix 24
AC6
A
924 936Right-handed alpha
Helix 25
AC7
A
960 995Right-handed alpha
Helix 26
AC8
A
998 1007Right-handed alpha
Helix 27
AC9
A
1011 1025Right-handed alpha
Helix 28
AD1
A
1029 1052Right-handed alpha
Helix 29
AD2
A
1096 1107Right-handed alpha
Helix 30
AD3
A
1107 1137Right-handed alpha
Helix 31
AD4
A
1137 1145Right-handed alpha
Helix 32
AD5
A
1167 1195Right-handed alpha
Helix 33
AD6
A
1199 1215Right-handed alpha
Helix 34
AD7
A
1215 1230Right-handed alpha
Helix 35
AD8
A
1265 1293Right-handed alpha
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There are 2 sheets in PDB entry 8TQM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
838 842first strand
Strand 2
A
884 888anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 913first strand
Strand 2
A
891 896anti-parallel
Strand 3
A
952 957anti-parallel
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