Analysis of interatomic Contacts of Structural Units in PDB entry:
8TQZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8TQZ entry

There are 10 chains in PDB entry 8TQZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	TYR 9	LEU 305
H	LYS 4	LEU 305
A	PRO 41	ASP 459
D	GLY 8	LEU 351
E	SER 222	ARG 517
I	PHE 157	ILE 304
B	PRO 41	GLU 458
C	GLY 8	LEU 351
F	ASP 172	ARG 517
J	MET 1	CYS 334

There are126 helices in PDB entry 8TQZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	10	15	Right-handed 310
Helix 2	AA2	G	21	35	Right-handed alpha
Helix 3	AA3	G	44	60	Right-handed alpha
Helix 4	AA4	G	62	74	Right-handed alpha
Helix 5	AA5	G	75	77	Right-handed 310
Helix 6	AA6	G	90	116	Right-handed alpha
Helix 7	AA7	G	117	119	Right-handed 310
Helix 8	AA8	G	131	144	Right-handed alpha
Helix 9	AA9	G	160	170	Right-handed alpha
Helix 10	AB1	G	209	211	Right-handed 310
Helix 11	AB2	G	212	222	Right-handed alpha
Helix 12	AB3	G	231	235	Right-handed 310
Helix 13	AB4	G	247	252	Right-handed alpha
Helix 14	AB5	G	277	281	Right-handed 310
Helix 15	AB6	G	295	303	Right-handed alpha
Helix 16	AB7	H	6	17	Right-handed alpha
Helix 17	AB8	H	21	35	Right-handed alpha
Helix 18	AB9	H	46	60	Right-handed alpha
Helix 19	AC1	H	62	76	Right-handed alpha
Helix 20	AC2	H	96	116	Right-handed alpha
Helix 21	AC3	H	117	119	Right-handed 310
Helix 22	AC4	H	131	144	Right-handed alpha
Helix 23	AC5	H	160	170	Right-handed alpha
Helix 24	AC6	H	179	183	Right-handed 310
Helix 25	AC7	H	186	190	Right-handed 310
Helix 26	AC8	H	211	222	Right-handed alpha
Helix 27	AC9	H	242	246	Right-handed 310
Helix 28	AD1	H	247	252	Right-handed alpha
Helix 29	AD2	H	277	281	Right-handed 310
Helix 30	AD3	H	292	294	Right-handed 310
Helix 31	AD4	H	295	304	Right-handed alpha
Helix 32	AD5	A	64	68	Right-handed 310
Helix 33	AD6	A	74	87	Right-handed alpha
Helix 34	AD7	A	100	108	Right-handed alpha
Helix 35	AD8	A	109	113	Right-handed 310
Helix 36	AD9	A	130	142	Right-handed alpha
Helix 37	AE1	A	161	175	Right-handed alpha
Helix 38	AE2	A	228	233	Right-handed alpha
Helix 39	AE3	A	253	263	Right-handed alpha
Helix 40	AE4	A	268	276	Right-handed alpha
Helix 41	AE5	A	302	315	Right-handed alpha
Helix 42	AE6	D	9	25	Right-handed alpha
Helix 43	AE7	D	30	48	Right-handed alpha
Helix 44	AE8	D	53	72	Right-handed alpha
Helix 45	AE9	D	76	98	Right-handed alpha
Helix 46	AF1	D	128	145	Right-handed alpha
Helix 47	AF2	D	146	153	Right-handed alpha
Helix 48	AF3	D	154	159	Right-handed alpha
Helix 49	AF4	D	171	181	Right-handed alpha
Helix 50	AF5	D	199	209	Right-handed alpha
Helix 51	AF6	D	218	222	Right-handed 310
Helix 52	AF7	D	250	261	Right-handed alpha
Helix 53	AF8	D	270	274	Right-handed 310
Helix 54	AF9	D	296	305	Right-handed 310
Helix 55	AG1	D	317	321	Right-handed 310
Helix 56	AG2	D	332	334	Right-handed 310
Helix 57	AG3	D	335	344	Right-handed alpha
Helix 58	AG4	D	345	349	Right-handed 310
Helix 59	AG5	E	223	238	Right-handed alpha
Helix 60	AG6	E	271	283	Right-handed alpha
Helix 61	AG7	E	294	312	Right-handed alpha
Helix 62	AG8	E	312	325	Right-handed alpha
Helix 63	AG9	E	339	353	Right-handed alpha
Helix 64	AH1	E	368	380	Right-handed alpha
Helix 65	AH2	E	390	395	Right-handed alpha
Helix 66	AH3	E	396	398	Right-handed 310
Helix 67	AH4	E	418	430	Right-handed alpha
Helix 68	AH5	E	459	463	Right-handed 310
Helix 69	AH6	E	493	497	Right-handed 310
Helix 70	AH7	E	508	510	Right-handed 310
Helix 71	AH8	E	511	516	Right-handed alpha
Helix 72	AH9	I	184	190	Right-handed alpha
Helix 73	AI1	I	230	235	Right-handed alpha
Helix 74	AI2	B	74	87	Right-handed alpha
Helix 75	AI3	B	98	109	Right-handed alpha
Helix 76	AI4	B	110	113	Right-handed 310
Helix 77	AI5	B	130	142	Right-handed alpha
Helix 78	AI6	B	163	175	Right-handed alpha
Helix 79	AI7	B	196	199	Right-handed 310
Helix 80	AI8	B	228	234	Right-handed alpha
Helix 81	AI9	B	253	263	Right-handed alpha
Helix 82	AJ1	B	268	277	Right-handed alpha
Helix 83	AJ2	B	302	315	Right-handed alpha
Helix 84	AJ3	B	330	334	Right-handed 310
Helix 85	AJ4	B	339	341	Right-handed 310
Helix 86	AJ5	C	9	24	Right-handed alpha
Helix 87	AJ6	C	30	48	Right-handed alpha
Helix 88	AJ7	C	53	72	Right-handed alpha
Helix 89	AJ8	C	77	98	Right-handed alpha
Helix 90	AJ9	C	128	153	Right-handed alpha
Helix 91	AK1	C	171	182	Right-handed alpha
Helix 92	AK2	C	199	209	Right-handed alpha
Helix 93	AK3	C	219	223	Right-handed 310
Helix 94	AK4	C	250	261	Right-handed alpha
Helix 95	AK5	C	270	274	Right-handed 310
Helix 96	AK6	C	296	304	Right-handed 310
Helix 97	AK7	C	317	321	Right-handed 310
Helix 98	AK8	C	332	334	Right-handed 310
Helix 99	AK9	C	335	344	Right-handed alpha
Helix 100	AL1	C	345	349	Right-handed 310
Helix 101	AL2	F	191	196	Right-handed 310
Helix 102	AL3	F	204	217	Right-handed alpha
Helix 103	AL4	F	221	239	Right-handed alpha
Helix 104	AL5	F	247	267	Right-handed alpha
Helix 105	AL6	F	270	286	Right-handed alpha
Helix 106	AL7	F	292	312	Right-handed alpha
Helix 107	AL8	F	312	325	Right-handed alpha
Helix 108	AL9	F	339	353	Right-handed alpha
Helix 109	AM1	F	368	379	Right-handed alpha
Helix 110	AM2	F	390	395	Right-handed alpha
Helix 111	AM3	F	396	398	Right-handed 310
Helix 112	AM4	F	420	430	Right-handed alpha
Helix 113	AM5	F	439	443	Right-handed 310
Helix 114	AM6	F	459	464	Right-handed 310
Helix 115	AM7	F	475	479	Right-handed 310
Helix 116	AM8	F	493	497	Right-handed 310
Helix 117	AM9	F	511	517	Right-handed alpha
Helix 118	AN1	J	29	33	Right-handed 310
Helix 119	AN2	J	34	35	Right-handed 310
Helix 120	AN3	J	36	44	Right-handed alpha
Helix 121	AN4	J	86	93	Right-handed alpha
Helix 122	AN5	J	114	124	Right-handed alpha
Helix 123	AN6	J	184	190	Right-handed alpha
Helix 124	AN7	J	208	218	Right-handed alpha
Helix 125	AN8	J	223	236	Right-handed alpha
Helix 126	AN9	J	315	334	Right-handed alpha

There are 29 sheets in PDB entry 8TQZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	178	first strand
Strand 2	G	148	153	parallel
Strand 3	G	123	127	parallel
Strand 4	G	192	196	parallel
Strand 5	G	226	229	parallel
Strand 6	G	283	286	parallel
Strand 7	G	289	291	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	200	first strand
Strand 2	G	206	207	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	175	178	first strand
Strand 2	H	149	153	parallel
Strand 3	H	124	126	parallel
Strand 4	H	192	196	parallel
Strand 5	H	226	229	parallel
Strand 6	H	283	286	parallel
Strand 7	H	289	291	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	90	95	parallel
Strand 3	A	44	48	parallel
Strand 4	A	148	152	parallel
Strand 5	A	244	252	anti-parallel
Strand 6	A	179	187	anti-parallel
Strand 7	A	286	292	parallel
Strand 8	A	211	212	anti-parallel
Strand 9	A	201	206	anti-parallel
Strand 10	A	216	217	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	124	first strand
Strand 2	A	90	95	parallel
Strand 3	A	44	48	parallel
Strand 4	A	148	152	parallel
Strand 5	A	244	252	anti-parallel
Strand 6	A	179	187	anti-parallel
Strand 7	A	286	292	parallel
Strand 8	A	211	212	anti-parallel
Strand 9	A	201	206	anti-parallel
Strand 10	A	238	241	anti-parallel
Strand 11	I	192	196	anti-parallel
Strand 12	I	158	161	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	297	299	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	226	first strand
Strand 2	I	180	183	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	342	344	anti-parallel
Strand 3	A	360	362	parallel
Strand 4	A	377	379	parallel
Strand 5	A	395	396	parallel
Strand 6	A	411	413	parallel
Strand 7	A	429	431	parallel
Strand 8	A	448	449	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	356	first strand
Strand 2	A	373	375	parallel
Strand 3	A	390	392	parallel
Strand 4	A	407	409	parallel
Strand 5	A	424	425	parallel
Strand 6	A	442	443	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	385	first strand
Strand 2	A	401	402	parallel
Strand 3	A	418	419	parallel
Strand 4	A	436	437	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	325	first strand
Strand 2	D	265	268	parallel
Strand 3	D	231	234	parallel
Strand 4	D	164	168	parallel
Strand 5	D	188	192	parallel
Strand 6	D	214	217	parallel
Strand 7	E	482	484	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	245	248	anti-parallel
Strand 3	D	313	316	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	E	384	387	parallel
Strand 3	E	357	362	parallel
Strand 4	E	332	336	parallel
Strand 5	E	400	403	parallel
Strand 6	E	434	437	parallel
Strand 7	E	499	502	parallel
Strand 8	E	505	507	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	408	first strand
Strand 2	E	414	417	anti-parallel
Strand 3	E	489	491	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	90	95	parallel
Strand 3	B	44	48	parallel
Strand 4	B	148	152	parallel
Strand 5	B	244	252	anti-parallel
Strand 6	B	179	187	anti-parallel
Strand 7	B	286	292	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	297	299	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	217	first strand
Strand 2	B	201	205	anti-parallel
Strand 3	B	240	241	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	226	first strand
Strand 2	J	180	183	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	343	344	anti-parallel
Strand 3	B	360	362	parallel
Strand 4	B	377	379	parallel
Strand 5	B	395	396	parallel
Strand 6	B	411	413	parallel
Strand 7	B	429	431	parallel
Strand 8	B	448	449	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	356	first strand
Strand 2	B	373	375	parallel
Strand 3	B	390	392	parallel
Strand 4	B	407	409	parallel
Strand 5	B	424	425	parallel
Strand 6	B	442	443	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	418	419	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	C	265	268	parallel
Strand 3	C	231	234	parallel
Strand 4	C	164	168	parallel
Strand 5	C	188	192	parallel
Strand 6	C	214	217	parallel
Strand 7	F	482	484	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	313	316	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	F	383	387	parallel
Strand 3	F	357	362	parallel
Strand 4	F	332	336	parallel
Strand 5	F	400	404	parallel
Strand 6	F	434	437	parallel
Strand 7	F	499	501	parallel
Strand 8	F	506	508	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	F	414	417	anti-parallel
Strand 3	F	489	492	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	52	55	first strand
Strand 2	J	76	79	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	101	103	first strand
Strand 2	J	205	207	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	199	201	first strand
Strand 2	J	128	134	anti-parallel
Strand 3	J	300	304	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	167	170	first strand
Strand 2	J	158	160	anti-parallel
Strand 3	J	194	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8TQZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8TQZ