Analysis of interatomic Contacts of Structural Units in PDB entry:
8TR0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TR0 entry

There are 2 chains in PDB entry 8TR0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 31LYS 822
B
 ARG 31LYS 822
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8TR0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 81Right-handed alpha
Helix 2
AA2
A
101 114Right-handed alpha
Helix 3
AA3
A
115 117Right-handed 310
Helix 4
AA4
A
150 164Right-handed alpha
Helix 5
AA5
A
175 180Right-handed 310
Helix 6
AA6
A
194 208Right-handed alpha
Helix 7
AA7
A
220 237Right-handed alpha
Helix 8
AA8
A
252 265Right-handed alpha
Helix 9
AA9
A
277 292Right-handed alpha
Helix 10
AB1
A
300 304Right-handed 310
Helix 11
AB2
A
306 310Right-handed 310
Helix 12
AB3
A
330 339Right-handed alpha
Helix 13
AB4
A
349 360Right-handed alpha
Helix 14
AB5
A
389 412Right-handed alpha
Helix 15
AB6
A
419 424Right-handed 310
Helix 16
AB7
A
426 433Right-handed alpha
Helix 17
AB8
A
434 438Right-handed 310
Helix 18
AB9
A
572 577Right-handed alpha
Helix 19
AC1
A
579 602Right-handed alpha
Helix 20
AC2
A
610 612Right-handed 310
Helix 21
AC3
A
613 635Right-handed alpha
Helix 22
AC4
A
640 664Right-handed alpha
Helix 23
AC5
A
687 711Right-handed alpha
Helix 24
AC6
A
732 760Right-handed alpha
Helix 25
AC7
A
764 786Right-handed alpha
Helix 26
AC8
A
787 789Right-handed 310
Helix 27
AC9
A
797 820Right-handed alpha
Helix 28
AD1
B
65 82Right-handed alpha
Helix 29
AD2
B
101 116Right-handed alpha
Helix 30
AD3
B
150 164Right-handed alpha
Helix 31
AD4
B
176 180Right-handed 310
Helix 32
AD5
B
195 208Right-handed alpha
Helix 33
AD6
B
220 237Right-handed alpha
Helix 34
AD7
B
252 264Right-handed alpha
Helix 35
AD8
B
277 292Right-handed alpha
Helix 36
AD9
B
306 311Right-handed 310
Helix 37
AE1
B
330 339Right-handed alpha
Helix 38
AE2
B
349 360Right-handed alpha
Helix 39
AE3
B
389 412Right-handed alpha
Helix 40
AE4
B
426 433Right-handed alpha
Helix 41
AE5
B
434 438Right-handed 310
Helix 42
AE6
B
494 497Right-handed 310
Helix 43
AE7
B
588 603Right-handed alpha
Helix 44
AE8
B
611 634Right-handed alpha
Helix 45
AE9
B
638 641Right-handed 310
Helix 46
AF1
B
642 666Right-handed alpha
Helix 47
AF2
B
688 711Right-handed alpha
Helix 48
AF3
B
734 757Right-handed alpha
Helix 49
AF4
B
769 789Right-handed alpha
Helix 50
AF5
B
798 820Right-handed alpha
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There are 8 sheets in PDB entry 8TR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
39 45parallel
Strand 4
A
142 147parallel
Strand 5
A
168 170parallel
Strand 6
A
187 189parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 245first strand
Strand 2
A
212 217parallel
Strand 3
A
271 275parallel
Strand 4
A
296 298parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
468 474anti-parallel
Strand 3
A
477 486anti-parallel
Strand 4
A
490 492anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 521first strand
Strand 2
A
530 531anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
91 97anti-parallel
Strand 3
B
39 45parallel
Strand 4
B
142 147parallel
Strand 5
B
168 169parallel
Strand 6
B
187 188parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 247first strand
Strand 2
B
213 218parallel
Strand 3
B
271 275parallel
Strand 4
B
296 299parallel
Strand 5
B
321 325parallel
Strand 6
B
466 473anti-parallel
Strand 7
B
478 480anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 247first strand
Strand 2
B
213 218parallel
Strand 3
B
271 275parallel
Strand 4
B
296 299parallel
Strand 5
B
321 325parallel
Strand 6
B
466 473anti-parallel
Strand 7
B
484 486anti-parallel
Strand 8
B
490 492anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 540first strand
Strand 2
B
546 547anti-parallel
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